Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39900 999 / 0 Small GTP-binding protein (.1) AT5G08650 572 / 0 Small GTP-binding protein (.1) AT5G13650 148 / 3e-37 SVR3 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) AT2G31060 133 / 2e-32 EMB2785 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) AT1G56070 105 / 4e-23 LOS1, AT1G56075.1 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT1G45332 102 / 3e-22 Translation elongation factor EFG/EF2 protein (.1) AT2G45030 102 / 3e-22 Translation elongation factor EFG/EF2 protein (.1) AT3G22980 100 / 1e-21 Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT3G12915 97 / 9e-21 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT1G06220 91 / 8e-19 GFA1, CLO, MEE5 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G305300 [exp] 580 / 0 AT5G08650 1063 / 0.0 Small GTP-binding protein (.1) Potri.006G053000 [exp] 141 / 5e-35 AT5G13650 1123 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Potri.013G123700 [exp] 135 / 6e-33 AT2G31060 1084 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Potri.003G109900 [exp] 109 / 1e-24 AT1G45332 1330 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Potri.001G123600 [exp] 109 / 1e-24 AT1G45332 1337 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Potri.005G098100 [exp] 107 / 6e-24 AT1G56070 1648 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.007G065700 [exp] 104 / 5e-23 AT1G56070 1623 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.007G065600 [exp] 103 / 7e-23 AT1G56070 1620 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.009G152500 [exp] 97 / 1e-20 AT3G22980 1521 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007250 [exp] 1102 / 0 AT5G39900 1080 / 0.0 Small GTP-binding protein (.1) Lus10015364 [exp] 1090 / 0 AT5G39900 1082 / 0.0 Small GTP-binding protein (.1) Lus10035968 [exp] 584 / 0 AT5G08650 1102 / 0.0 Small GTP-binding protein (.1) Lus10025694 [exp] 530 / 0 AT5G08650 1009 / 0.0 Small GTP-binding protein (.1) Lus10007535 [exp] 125 / 9e-30 AT5G13650 1121 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Lus10002179 [exp] 116 / 9e-27 AT2G31060 1036 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Lus10039896 [exp] 114 / 3e-26 AT2G31060 976 / 0.0 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) Lus10031185 [exp] 105 / 9e-25 AT1G56070 504 / 6e-175 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10039840 [exp] 107 / 8e-24 AT2G45030 1289 / 0.0 Translation elongation factor EFG/EF2 protein (.1) Lus10018604 [exp] 107 / 1e-23 AT2G45030 1343 / 0.0 Translation elongation factor EFG/EF2 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00009 [poplar] [flax] GTP_EFTU Elongation factor Tu GTP binding domain CL0437 [poplar] [flax] EF-G_C PF00679 [poplar] [flax] EFG_C Elongation factor G C-terminus CL0437 [poplar] [flax] PF06421 [poplar] [flax] LepA_C GTP-binding protein LepA C-terminus
Representative CDS sequence Show only first row Show all	>Potri.017G079800.1 pacid=42814252 polypeptide=Potri.017G079800.1.p locus=Potri.017G079800 ID=Potri.017G079800.1.v4.1 annot-version=v4.1 ATGGGTTCTCTCTGCAGAGCATCAAAAACCCTAAAATCACAAAAATACCTCTCTCTACTACACACATATTCCAATTTCCCTCCATTCTCTTCTACATTCA CATTAAACGACAGCCGTCTTGGAGTAGCCCATGACTTCTGCTCCAATTCGCGCCAAAACAGCATCGATTTGGCCCAGTACTCACCTGAGAGAATCAGAAA CTTCTCTATTATTGCTCACGTAGACCATGGAAAGTCAACTCTTGCTGACCGGCTTTTGGAGCTCACGGGGACTATTAAAAGAGGGCATGGCCAGCCTCAA TACCTCGATAAATTGCAGGTGGAGAGAGAAAGGGGAATAACAGTTAAAGCACAGACAGCTACTATGTTCCACAAGTGCAACCATAATGGCTCAAACATTA AGGATGCAGACAAAGCACCGACATATCTACTAAATTTAATTGACACTCCTGGTCATGTCGATTTTAGTTATGAAGTATCCAGATCCTTGGCTGCTTGCCA GGGTGCACTTTTGGTTGTTGATGCTGTACAAGGTGTTCAGGCTCAAACCGTGGCTAATTTCTATCTTGCTTTTGAATCTAACCTTGCTATAATACCTGTC ATTAACAAAATTGACCAGCCAACTGCTGATCCTGAACGCGTCAAAGCTCAACTAAAATCAATGTTTGATCTTGAACCCAGTGATTGTCTTTTGACATCTG CCAAAACAGGGCTGGGCCTCGAGCAAGTTCTTCCCAGTGTAATAGATCGGATACCTCCTCCTTCTGGGAGTACTAGTTCACCTTTGCGTATGCTTTTGTT GGATTCTTACTATGATGAATACAAGGGAGTGATTTGCCATGTTGCCATTGTGGATGGTGTGCTGCGCAAAGGCGATAAGATTTCATCTGCAGCAACTGGT CATACATATGAAGTTGCAGATGTAGGGATCATGCATCCTGAACTAACTCCAACCGGAGTTCTTCTAACTGGACAAGTGGGGTATATTGTTAGTGGCATGA GATCAACCAAAGAAGCACGTGTTGGAGACACCCTACATCATAGTCGATTCAGTGTAGAATCTCTACCAGGTTTTAAGCCTGCAAAACATATGGTGTTTTC TGGTCTCTACCCAGTAGATGGATCTGATTTTGATGCACTAAACCATGCTATAGAGAGACTGACATGCAATGATGCCAGTGTCTCTGTTACAAAAGAGAGC AGTTCTGCACTTGGTCTGGGTTTTAGATGTGGTTTCTTAGGTTTACTTCACATGGATGTTTTCCATCAGCGTCTTGAACAAGAACATGGAGCTCATGTCA TTTCTACAGTTCCAACTGTTCCATATATTTTTGAGTATTCTGATGGAAGCAAAGTACAAGTTCAGAATCCAGCTATGTTAACCTCTAACCCCAATAAACG AGTTACAGCTAGCTGGGAGCCTACAGTCATAGCTACAATTATTATCCCTAGTGAGTATGTGGGGCCTGTTATTACCCTTTGCTCTGAACGGAGAGGGCAG CAGTTGGAGTATTCATTTGTGGACAGCCAACGAGCCTTTATGAAGTATCGACTACCCTTGAGGGAAATCGTTGTTGATTTTTACAATGAGCTAAAGAGTA TCACATCAGGATATGCATCATTTGACTATGAGGATTCAGATTATCAAGAATCTGATTTGGTGAAACTCGACATTGTCTTAAATGGACAATCAGTCGATGC TATGGCAACTATCGTTCATAAACTGAAGGCACAACGCATCGGTCGGGAACTGGTGGAGAAACTGAAGAAATTTATAGACAGGCAAATGTTTGAGATAACG ATCCAAGCTGCAATTGGAGCAAAAGTTATTGCAAGGGAGACGATTTCGGCCATGCGAAAGAATGTCCTTGCAAAGTGTTATGGTGGGGATGTTACTCGAA AGAAAAAGCTATTGGAAAAACAAAAGGAAGGAAAAAAGCGAATGAAGCGCATTGGTTCTGTAGACATACCTCAGGAGGCTTTCCATGAACTGTTGAGAGT GTCGTAG
AA sequence Show only first row Show all	>Potri.017G079800.1 pacid=42814252 polypeptide=Potri.017G079800.1.p locus=Potri.017G079800 ID=Potri.017G079800.1.v4.1 annot-version=v4.1 MGSLCRASKTLKSQKYLSLLHTYSNFPPFSSTFTLNDSRLGVAHDFCSNSRQNSIDLAQYSPERIRNFSIIAHVDHGKSTLADRLLELTGTIKRGHGQPQ YLDKLQVERERGITVKAQTATMFHKCNHNGSNIKDADKAPTYLLNLIDTPGHVDFSYEVSRSLAACQGALLVVDAVQGVQAQTVANFYLAFESNLAIIPV INKIDQPTADPERVKAQLKSMFDLEPSDCLLTSAKTGLGLEQVLPSVIDRIPPPSGSTSSPLRMLLLDSYYDEYKGVICHVAIVDGVLRKGDKISSAATG HTYEVADVGIMHPELTPTGVLLTGQVGYIVSGMRSTKEARVGDTLHHSRFSVESLPGFKPAKHMVFSGLYPVDGSDFDALNHAIERLTCNDASVSVTKES SSALGLGFRCGFLGLLHMDVFHQRLEQEHGAHVISTVPTVPYIFEYSDGSKVQVQNPAMLTSNPNKRVTASWEPTVIATIIIPSEYVGPVITLCSERRGQ QLEYSFVDSQRAFMKYRLPLREIVVDFYNELKSITSGYASFDYEDSDYQESDLVKLDIVLNGQSVDAMATIVHKLKAQRIGRELVEKLKKFIDRQMFEIT IQAAIGAKVIARETISAMRKNVLAKCYGGDVTRKKKLLEKQKEGKKRMKRIGSVDIPQEAFHELLRVS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39900			Small GTP-binding protein (.1)		Potri.017G079800 [exp]	0	1
AT4G16630			DEA(D/H)-box RNA helicase fami...		Potri.005G241300 [exp]	4.69	0.8412
AT5G11240			transducin family protein / WD...		Potri.010G005400 [exp]	5.09	0.8218
AT1G79150			binding (.1)		Potri.005G096900 [exp]	11.48	0.8091
AT2G18220			Noc2p family (.1)		Potri.001G012800 [exp]	12.48	0.8091
AT5G14580			polyribonucleotide nucleotidyl...		Potri.001G347900 [exp]	13.74	0.7936
AT3G11964			RNA binding;RNA binding (.1)		Potri.016G062600 [exp]	14.83	0.8044
AT1G10490			Domain of unknown function (DU...		Potri.005G085600 [exp]	16.24	0.7693
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Potri.011G143100 [exp]	18.24	0.7172	SR45.1
AT4G04940			transducin family protein / WD...		Potri.006G078900 [exp]	18.52	0.7970
AT1G29940		NRPA2	nuclear RNA polymerase A2 (.1)		Potri.001G030750 [exp]	21.90	0.8013

Compare expression of checked genes

Potri.017G079800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.