Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15140 433 / 2e-150 Galactose mutarotase-like superfamily protein (.1) AT3G47800 407 / 2e-142 Galactose mutarotase-like superfamily protein (.1) AT3G17940 318 / 3e-107 Galactose mutarotase-like superfamily protein (.1) AT3G01260 279 / 6e-91 Galactose mutarotase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G129700 [exp] 471 / 3e-167 AT3G47800 414 / 5e-145 Galactose mutarotase-like superfamily protein (.1) Potri.017G080200 [exp] 464 / 1e-164 AT3G47800 406 / 9e-142 Galactose mutarotase-like superfamily protein (.1) Potri.017G080100 [exp] 456 / 2e-161 AT3G47800 397 / 3e-138 Galactose mutarotase-like superfamily protein (.1) Potri.012G128800 [exp] 432 / 5e-152 AT3G47800 459 / 1e-162 Galactose mutarotase-like superfamily protein (.1) Potri.012G045875 [exp] 342 / 6e-117 AT3G17940 555 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.017G129300 [exp] 322 / 2e-108 AT3G17940 496 / 1e-177 Galactose mutarotase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015365 [exp] 437 / 2e-153 AT5G15140 403 / 7e-138 Galactose mutarotase-like superfamily protein (.1) Lus10007251 [exp] 435 / 5e-153 AT5G15140 404 / 7e-139 Galactose mutarotase-like superfamily protein (.1) Lus10005251 [exp] 404 / 4e-141 AT5G15140 370 / 2e-126 Galactose mutarotase-like superfamily protein (.1) Lus10023611 [exp] 398 / 2e-138 AT3G47800 462 / 5e-164 Galactose mutarotase-like superfamily protein (.1) Lus10030673 [exp] 393 / 3e-134 AT5G15140 358 / 1e-118 Galactose mutarotase-like superfamily protein (.1) Lus10010976 [exp] 311 / 1e-104 AT3G17940 497 / 4e-178 Galactose mutarotase-like superfamily protein (.1) Lus10000452 [exp] 292 / 2e-97 AT3G17940 436 / 1e-154 Galactose mutarotase-like superfamily protein (.1) Lus10026181 [exp] 279 / 4e-92 AT3G17940 500 / 3e-179 Galactose mutarotase-like superfamily protein (.1) Lus10024242 [exp] 149 / 2e-43 AT3G47800 155 / 3e-46 Galactose mutarotase-like superfamily protein (.1) Lus10042485 [exp] 66 / 3e-13 AT3G17940 113 / 2e-31 Galactose mutarotase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [poplar] [flax] Gal_mutarotase PF01263 [poplar] [flax] Aldose_epim Aldose 1-epimerase
Representative CDS sequence Show only first row Show all	>Potri.017G080000.1 pacid=42813684 polypeptide=Potri.017G080000.1.p locus=Potri.017G080000 ID=Potri.017G080000.1.v4.1 annot-version=v4.1 ATGGCGAAGGTAACTGTGTTGCTTTGTTTTTGCATTCTAGCAGTCTTTGGTTCTGTTAATGCCCACACAGGAAAGGAAAAGGTTGGTATCTATGAGCTTA AGAGAGGAGATATGTCCTTGAAGTTTACCAATTGGGGGGCAACTCTTGTCTCCTTCGTTCTCCCTGACAAAAATGGAAAGCTGATTGATATTGTTCTTGG ATACGATACAATTAAGCAATACAAGAACGATACAACATATTTTGGAGCCATTGTTGGACGAGTCGCTAACAGAATTAAGGGTGCTCAATTTAAGCTAAAT GGACACACATATAAGCTAGTTCCTAATGAAGGGAAAAACATGCTTCATGGTGGTCCAAAGGGATATGCTGATGTTGTTTGGGAAGTGACCAAGTATCAGA ACAAGGGTCATAAACCTCACATTGTTTTTAGCTATCACAGTTTTGACGGGGAAGAAGGATTTCCTGGAGAGATACTAGTCACTGTCAGGTATACTCTCCT TGCAGATAACCAAGTGACAGTTGTAATGAAAGCCAAGAATATTGGTAACAAGGCAACCCCTGTAAATATTGCCAACCATGCTTACTGGAACCTGGGAGGT CATAACAGTGGCGACATCTTGTCTGAAAAGATTCAGATTTTTGCGTCCAATTACACACCTGTTGATAACGACCTTATTCCAACTGGGAAAATCGAAGCTG TGAAGGGAACTCCATTTGATTTCCTCAAACCCGAGGCCATTGGAAGCAGGACCAGGCAACTTCCTAAAGGTTATGATATCAACTACGCTCTTGATGGAGT TCATGGTGGCAAGATTAGGAAAGCAGCAGTGTTGCAAGACGAGAAGTCCGGAATTGAAATGGAGCTCTCGACAAACGCCCCTGGGTTGCAATTCTATACT GGTAACATGATCAAGGATGTGAAGGGAAAAGCTGGATTTGTGTACAAGGCTCATGCAGCTCTATGCTTGGAGACTCAATGGTATCCTGACTATGTTAATC AACCCGACTTCCCTCAATCTATTGTGGAGCCTCGAAAGAATTACAAACATGTAATGTTGTACAAATTTTCATCACATTAA
AA sequence Show only first row Show all	>Potri.017G080000.1 pacid=42813684 polypeptide=Potri.017G080000.1.p locus=Potri.017G080000 ID=Potri.017G080000.1.v4.1 annot-version=v4.1 MAKVTVLLCFCILAVFGSVNAHTGKEKVGIYELKRGDMSLKFTNWGATLVSFVLPDKNGKLIDIVLGYDTIKQYKNDTTYFGAIVGRVANRIKGAQFKLN GHTYKLVPNEGKNMLHGGPKGYADVVWEVTKYQNKGHKPHIVFSYHSFDGEEGFPGEILVTVRYTLLADNQVTVVMKAKNIGNKATPVNIANHAYWNLGG HNSGDILSEKIQIFASNYTPVDNDLIPTGKIEAVKGTPFDFLKPEAIGSRTRQLPKGYDINYALDGVHGGKIRKAAVLQDEKSGIEMELSTNAPGLQFYT GNMIKDVKGKAGFVYKAHAALCLETQWYPDYVNQPDFPQSIVEPRKNYKHVMLYKFSSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15140			Galactose mutarotase-like supe...		Potri.017G080000 [exp]	0	1
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Potri.002G154700 [exp]	1.00	0.9672	Pt-ANL2.1
AT2G44920			Tetratricopeptide repeat (TPR)...		Potri.010G200000 [exp]	2.00	0.9578
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Potri.008G162150 [exp]	2.44	0.9389
AT5G45040		CYTC6A	cytochrome c6A, Cytochrome c (...		Potri.015G121101 [exp]	3.87	0.9174
AT3G51430		SSL5, YLS2	YELLOW-LEAF-SPECIFIC GENE 2, S...		Potri.006G140500 [exp]	4.00	0.9328
AT1G22430			GroES-like zinc-binding dehydr...		Potri.018G142700 [exp]	5.19	0.9109	HNL.4
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Potri.003G036600 [exp]	6.32	0.9098
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Potri.017G048200 [exp]	6.63	0.8986
AT4G26555			FKBP-like peptidyl-prolyl cis-...		Potri.001G467100 [exp]	8.94	0.9134
AT4G15110		CYP97B3	"cytochrome P450, family 97, s...		Potri.006G006200 [exp]	9.05	0.8839

Compare expression of checked genes

Potri.017G080000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.