Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47800 397 / 4e-138 Galactose mutarotase-like superfamily protein (.1) AT5G15140 384 / 4e-131 Galactose mutarotase-like superfamily protein (.1) AT3G17940 322 / 7e-109 Galactose mutarotase-like superfamily protein (.1) AT3G01260 265 / 2e-85 Galactose mutarotase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G080200 [exp] 701 / 0 AT3G47800 406 / 9e-142 Galactose mutarotase-like superfamily protein (.1) Potri.004G129700 [exp] 544 / 0 AT3G47800 414 / 5e-145 Galactose mutarotase-like superfamily protein (.1) Potri.017G080000 [exp] 456 / 2e-161 AT5G15140 432 / 3e-150 Galactose mutarotase-like superfamily protein (.1) Potri.012G128800 [exp] 414 / 7e-145 AT3G47800 459 / 1e-162 Galactose mutarotase-like superfamily protein (.1) Potri.012G045875 [exp] 351 / 2e-120 AT3G17940 555 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.017G129300 [exp] 326 / 2e-110 AT3G17940 496 / 1e-177 Galactose mutarotase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007251 [exp] 455 / 7e-161 AT5G15140 404 / 7e-139 Galactose mutarotase-like superfamily protein (.1) Lus10015365 [exp] 454 / 5e-160 AT5G15140 403 / 7e-138 Galactose mutarotase-like superfamily protein (.1) Lus10005251 [exp] 416 / 4e-146 AT5G15140 370 / 2e-126 Galactose mutarotase-like superfamily protein (.1) Lus10023611 [exp] 393 / 2e-136 AT3G47800 462 / 5e-164 Galactose mutarotase-like superfamily protein (.1) Lus10030673 [exp] 398 / 3e-136 AT5G15140 358 / 1e-118 Galactose mutarotase-like superfamily protein (.1) Lus10010976 [exp] 317 / 1e-106 AT3G17940 497 / 4e-178 Galactose mutarotase-like superfamily protein (.1) Lus10026181 [exp] 285 / 2e-94 AT3G17940 500 / 3e-179 Galactose mutarotase-like superfamily protein (.1) Lus10000452 [exp] 284 / 2e-94 AT3G17940 436 / 1e-154 Galactose mutarotase-like superfamily protein (.1) Lus10024242 [exp] 139 / 1e-39 AT3G47800 155 / 3e-46 Galactose mutarotase-like superfamily protein (.1) Lus10042485 [exp] 71 / 4e-15 AT3G17940 113 / 2e-31 Galactose mutarotase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [poplar] [flax] Gal_mutarotase PF01263 [poplar] [flax] Aldose_epim Aldose 1-epimerase
Representative CDS sequence Show only first row Show all	>Potri.017G080100.1 pacid=42813857 polypeptide=Potri.017G080100.1.p locus=Potri.017G080100 ID=Potri.017G080100.1.v4.1 annot-version=v4.1 ATGGCCAAGTTTTCTGCGTCGTTTTGTTTTATCATACTGGTAATTTCTGGGTGTGCCTGTATTGACTCGGCAATGGGGGGAGAGATTGGGATTTACGAGC TCAAGAAGGGAAATCTCAGCATGAAGCTTACCAATTATGGTGCCCGTATCATCTCCCTTGTTCTTCCTGATAAAAATGGAAAGCTAGGTGATGTTGCTCT TGGCTTTGATACTATTGAGGAATTCATGAATGCTTCATCACCCTTTGGAGCCACTGTGGGACGGGTTGCCAATAGAATCTCTAATGCTCAGTTTACCTTG AATGGAACTGTTTACAAACTACCTGCTAATTCAGGGAATAACACGATTCATGGCGGGCCTATAGGATTCAGTAAGGTTGTTTGGAAAGTGAAAAAGTACA GCCCAGATGGTCCTGTTCCTCACATTGTCTTTGCTTATCACAGCTTTGATGGTGAACAAGGATTCCCTGGTGATCTCCTTGTAAAAACAAGCTACACGCT CCTTGGAGACAACCAACTGTGTATAACAATGGAAGCAAAAGCTCTAAACAAGGCCACGCCGGTTTGTCTAGTCAACCATGCCTTTTGGAACCTTGGTGGC CACAATAGTGGCGATATCTTGTCAGAAAAAATTCAGATTTTTGCTTCGCGTTACCTTCCTGTTGATAGTACGCTCATTCCTACAGGAGAAATTGTGACAG TGAAAGAAACACCCTATGATTTTCTCAAGCCTAACACCATTGGCAGCAGGATCAACGAACTCCCTAAGGGCTATGACACCAACTACGCACTTGATGGAAG TGGAAACAAGAAGTTGAGGAAAGCAGCAATTGTGCATGACGAGAAGTCTGGAAGAGCAATGGAGATATTAACCAATCAACCTGGTGTGCAGTTGTTTACT AGCAACACTTTGAACGTGAAGGGAAAAGGTGGTTTTATGTATAAACCTCATGGAGCTCTATCTCTAGAGACTCAAGGATTTCCTGATTCTGTTAACCGTC CCAACTTCCCTTCACAGATTGTGAATCCAGGGAAGCCCTACAAGCATTACATGTTGTTCAAGTTCTCTACTTTCTAG
AA sequence Show only first row Show all	>Potri.017G080100.1 pacid=42813857 polypeptide=Potri.017G080100.1.p locus=Potri.017G080100 ID=Potri.017G080100.1.v4.1 annot-version=v4.1 MAKFSASFCFIILVISGCACIDSAMGGEIGIYELKKGNLSMKLTNYGARIISLVLPDKNGKLGDVALGFDTIEEFMNASSPFGATVGRVANRISNAQFTL NGTVYKLPANSGNNTIHGGPIGFSKVVWKVKKYSPDGPVPHIVFAYHSFDGEQGFPGDLLVKTSYTLLGDNQLCITMEAKALNKATPVCLVNHAFWNLGG HNSGDILSEKIQIFASRYLPVDSTLIPTGEIVTVKETPYDFLKPNTIGSRINELPKGYDTNYALDGSGNKKLRKAAIVHDEKSGRAMEILTNQPGVQLFT SNTLNVKGKGGFMYKPHGALSLETQGFPDSVNRPNFPSQIVNPGKPYKHYMLFKFSTF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47800			Galactose mutarotase-like supe...		Potri.017G080100 [exp]	0	1
AT1G03670			ankyrin repeat family protein ...		Potri.013G134500 [exp]	2.00	0.9070
AT1G19670		CORI1, ATHCOR1,...	CORONATINE-INDUCED PROTEIN 1, ...		Potri.005G214100 [exp]	8.00	0.9032
AT1G80460		GLI1, NHO1	nonhost resistance to P. s. ph...		Potri.003G030900 [exp]	13.34	0.8347	Pt-NHO1.1
AT5G45960			GDSL-like Lipase/Acylhydrolase...		Potri.011G062000 [exp]	15.19	0.9064
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Potri.006G114200 [exp]	17.46	0.8902
AT5G16560	GARP	KAN1, KAN	KANADI 1, KANADI, Homeodomain-...		Potri.004G082400 [exp]	21.74	0.8757
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Potri.014G012800 [exp]	32.83	0.8511
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Potri.008G148200 [exp]	34.17	0.8832	ATHB13.2
AT3G49810			ARM repeat superfamily protein...		Potri.002G116500 [exp]	36.00	0.8215
AT2G23440			unknown protein		Potri.007G041400 [exp]	38.47	0.8417

Compare expression of checked genes

Potri.017G080100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.