Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28760 528 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005250 [exp] 592 / 0 AT3G28760 529 / 0.0 unknown protein Lus10030673 [exp] 209 / 3e-62 AT5G15140 358 / 1e-118 Galactose mutarotase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01959 [poplar] [flax] DHQS 3-dehydroquinate synthase II
Representative CDS sequence Show only first row Show all	>Potri.017G080300.1 pacid=42814098 polypeptide=Potri.017G080300.1.p locus=Potri.017G080300 ID=Potri.017G080300.1.v4.1 annot-version=v4.1 ATGGCTACGTTGCTCTCTTCCACTTCTTTCCTGGGATTCCCATTCCCCAAGCATTTCTCCTACTTCACTCCCTTAACAGATAAAAGGAACTCGTTGAGAT TGAATAAGGAAAACCTTTTGCGCTACAGTTGTTGTGTCACAACGTGTTCTTCTTCCACTTCTGTGTTCACAATGTCATCAAGTGGCGGTTCCTATGAGAA ATCGAAGAGGGTATGGATATGGACAGAAAGCAAGCAAGTCATGACTGCTGCTGTGGAAAGAGGCTGGAATACCTTCATCTTCTTGTCCAACCATAGACAA CTTGCTATTGACTGGTCATCATTCTCCTTTATAAACCCTTTATTTATCGAGGAAGGAGAAGTTTTGGATGGTGAGAACAAAAGGGTTGCCACTATTTTTG AGGTTTCAACTCCCCAAGAATTACAGCAGCTTCAACCAGAAAATGGGCAGGCTGAGAATGTGATTATTAATCTATTGGATTGGCAGATAATACCTGCAGA GAATATTGTTGCAGCTTTTCAAGGCAGTCAAAAGACAGTGCTTGCCATCTCAAAAACTCATTCTGAAGCACAAATCTTCCTTGAGGCCTTGGAGCATGGT TTGGGTGGAGTTGTTCTAAAAGTTGAAGATGTTGAAGCTGTTATTAAGTTAAAGGAATATTGTGATAGAAGGAATGAAGCAACCAATCTGCTAAGCTTGA CCAAAGCTACCATAACTCGAGTTCAAGTAGCTGGAATGGGTGATCGTGTTTGTGTGGATCTTTGTAGCCTCATGAAACCTGGTGAAGGGCTTCTGGTTGG TTCCTTTGCTAGAGGACTATTCCTTGTTCACTCAGAGTGCTTGGAGTCAAATTACATTGCAAGCAGGCCATTTCGCGTCAATGCAGGACCAGTGCATGCA TACGTCTCGATTCCAGGTGGAAGGACTTGCTATCTTTCAGAGCTAAAAGCAGGTGAAGAAGTTTCTGTGGCTGATCAGAACGGGCAGCTGCGAACTGCAA TTGTTGGCCGTGTGAAGATAGAAACTAGACCTCTTATTCTTGTTGAGGCAAAGAGAGAGTCAGATGATCAAACAGTATACAGCATTTTCCTCCAGAATGC AGAAACAGTTGCCTTAATCCCTCCTTGTGAAGGAAATGGACTGCTAAAAGCAGCTATTCCTGTTACTTCACTGAAAGTTGGAGATGAAGTATTATTGCGA ATACAAGGAGGAGCACGGCATACGGGAATAGAAATTCAAGAATTCATTGTTGAGAACTGA
AA sequence Show only first row Show all	>Potri.017G080300.1 pacid=42814098 polypeptide=Potri.017G080300.1.p locus=Potri.017G080300 ID=Potri.017G080300.1.v4.1 annot-version=v4.1 MATLLSSTSFLGFPFPKHFSYFTPLTDKRNSLRLNKENLLRYSCCVTTCSSSTSVFTMSSSGGSYEKSKRVWIWTESKQVMTAAVERGWNTFIFLSNHRQ LAIDWSSFSFINPLFIEEGEVLDGENKRVATIFEVSTPQELQQLQPENGQAENVIINLLDWQIIPAENIVAAFQGSQKTVLAISKTHSEAQIFLEALEHG LGGVVLKVEDVEAVIKLKEYCDRRNEATNLLSLTKATITRVQVAGMGDRVCVDLCSLMKPGEGLLVGSFARGLFLVHSECLESNYIASRPFRVNAGPVHA YVSIPGGRTCYLSELKAGEEVSVADQNGQLRTAIVGRVKIETRPLILVEAKRESDDQTVYSIFLQNAETVALIPPCEGNGLLKAAIPVTSLKVGDEVLLR IQGGARHTGIEIQEFIVEN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G28760			unknown protein		Potri.017G080300 [exp]	0	1
AT1G44790			ChaC-like family protein (.1)		Potri.005G176300 [exp]	5.19	0.7374
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Potri.008G092300 [exp]	9.48	0.7144
AT3G55240			Plant protein 1589 of unknown ...		Potri.010G211500 [exp]	10.24	0.7100
AT5G39790			5'-AMP-activated protein kinas...		Potri.017G125400 [exp]	10.39	0.7650
AT1G75270		DHAR2	dehydroascorbate reductase 2 (...		Potri.010G211600 [exp]	11.87	0.8092
AT4G18460			D-Tyr-tRNA(Tyr) deacylase fami...		Potri.011G062200 [exp]	24.08	0.6998
AT2G17870		ATCSP3	ARABIDOPSIS COLD SHOCK DOMAIN ...		Potri.005G174300 [exp]	25.45	0.7033
AT3G52870			IQ calmodulin-binding motif fa...		Potri.016G034100 [exp]	31.30	0.7540
AT2G25100			Polynucleotidyl transferase, r...		Potri.008G019800 [exp]	35.94	0.7140
AT5G39530			Protein of unknown function (D...		Potri.017G087500 [exp]	37.94	0.6853

Compare expression of checked genes

Potri.017G080300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.