Plant FIBer expression Database

Potri.017G080801 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.017G080801.1 pacid=42813651 polypeptide=Potri.017G080801.1.p locus=Potri.017G080801 ID=Potri.017G080801.1.v4.1 annot-version=v4.1
ATGTTATTTCCAGAAGTTTCTCTATGGAGAGGAGGTGGTATGCCAATCCCAATGGGTTTACTTTACTACTCCTACAGTGCCAATGCATCAACAAGGGGAA
TAATCCCACATACGATAAGCCAGAATTCTAATTTCTTGAAACCTGTGGGTTTAGATTCTTACTTTTCAGCTGGTAACCACAAGTGCCACATTATCATGAC
ATTTTCACGAAATATATTTTCTGTTCTCTTTCTTACTCGATGGAGAATCCCTCATCTGCTGATTTGTATTCTTTTTTTTACTCCTATTCTTTACGGATAC
TTCAATTCATTTCTGATTTTTTTTGTTCTTTCTACTAATACATTCCTCTTTTTATCCAACAATAAAAGATAA
AA sequence
>Potri.017G080801.1 pacid=42813651 polypeptide=Potri.017G080801.1.p locus=Potri.017G080801 ID=Potri.017G080801.1.v4.1 annot-version=v4.1
MLFPEVSLWRGGGMPIPMGLLYYSYSANASTRGIIPHTISQNSNFLKPVGLDSYFSAGNHKCHIIMTFSRNIFSVLFLTRWRIPHLLICILFFTPILYGY
FNSFLIFFVLSTNTFLFLSNNKR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.017G080801
[exp]
0 1
AT5G03890 unknown protein Potri.015G005700
[exp]
3.16 0.9458
AT1G16840 unknown protein Potri.008G005900
[exp]
11.57 0.8441
Potri.001G302801
[exp]
16.12 0.8467
AT3G47440 TIP5;1 tonoplast intrinsic protein 5;... Potri.003G108500
[exp]
17.60 0.8224 Pt-TIP5.1
AT2G33710 AP2_ERF Integrase-type DNA-binding sup... Potri.005G087200
[exp]
18.00 0.8135
AT5G47540 Mo25 family protein (.1) Potri.003G055900
[exp]
27.56 0.9053
AT4G33090 ATAPM1, APM1 aminopeptidase M1 (.1) Potri.001G199000
[exp]
27.98 0.7258
AT2G38480 Uncharacterised protein family... Potri.016G128200
[exp]
37.22 0.8229
AT1G06280 AS2 LBD2 LOB domain-containing protein ... Potri.013G123900
[exp]
39.37 0.9006
AT3G10040 Trihelix sequence-specific DNA binding ... Potri.016G096300
[exp]
46.13 0.8557

Potri.017G080801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.