Plant FIBer expression Database

Potri.017G080900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G15190 37 / 0.0007 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.017G080900.2 pacid=42812916 polypeptide=Potri.017G080900.2.p locus=Potri.017G080900 ID=Potri.017G080900.2.v4.1 annot-version=v4.1
ATGACTGTGAGGGAGAGGGAGAGGAATAACAAGAATGATAGTCAAGAAATTGGAGGGTGTGATACAGAAGATCAGGGATCAAAAGATTTGATCAAGAAGA
AGGTAGGTTTTGTGCACAGTCAGGTTCTGAGGATAAGAGAGGAGGATTTACATCTTGGTGAAGAAAGATTGAGTGCTGCTAAAGAAATGATCAGGAAGGC
TTTGATTGGGAAATTAGAAGAAAGCTTTGGTGTCCCCCCACATGCTGCTATGCAGGTTGTGTTTTTTTCCAGGCCTATCTTGCCTTGCTCGCCTCTTAGT
GGCAAAACTACAGTCAAGGCCTTGCACTAA
AA sequence
>Potri.017G080900.2 pacid=42812916 polypeptide=Potri.017G080900.2.p locus=Potri.017G080900 ID=Potri.017G080900.2.v4.1 annot-version=v4.1
MTVRERERNNKNDSQEIGGCDTEDQGSKDLIKKKVGFVHSQVLRIREEDLHLGEERLSAAKEMIRKALIGKLEESFGVPPHAAMQVVFFSRPILPCSPLS
GKTTVKALH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.017G080900
[exp]
0 1
AT1G56600 ATGOLS2 galactinol synthase 2 (.1) Potri.005G006800
[exp]
1.41 0.9827
AT4G38620 MYB AtMYB4 myb domain protein 4 (.1) Potri.011G040300
[exp]
2.00 0.9783
AT2G42560 late embryogenesis abundant do... Potri.019G090300
[exp]
2.44 0.9776
AT2G48140 EDA4 embryo sac development arrest ... Potri.008G155200
[exp]
4.69 0.9431
Potri.015G020450
[exp]
5.29 0.9462
AT5G66440 unknown protein Potri.005G229800
[exp]
5.47 0.9287
AT3G30210 MYB ATMYB121 myb domain protein 121 (.1) Potri.017G099500
[exp]
6.70 0.9438
AT4G17030 ATHEXPBETA3.1, ... expansin-like B1 (.1) Potri.003G083200
[exp]
8.48 0.9499 PtrEXLB1,EXLB1.1
AT2G38870 Serine protease inhibitor, pot... Potri.010G075400
[exp]
9.16 0.9373 BGIT.1
AT4G03540 Uncharacterised protein family... Potri.004G043300
[exp]
9.21 0.9503

Potri.017G080900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.