Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14960 852 / 0 TUA6 Tubulin/FtsZ family protein (.1.2) AT1G50010 849 / 0 TUA2 tubulin alpha-2 chain (.1) AT1G04820 849 / 0 TOR2, TUA4 TORTIFOLIA 2, tubulin alpha-4 chain (.1) AT5G19780 818 / 0 TUA5 tubulin alpha-5 (.1) AT5G19770 818 / 0 TUA3 tubulin alpha-3 (.1) AT1G64740 795 / 0 TUA1 alpha-1 tubulin (.1) AT1G75780 370 / 5e-125 TUB1 tubulin beta-1 chain (.1) AT5G62690 367 / 1e-123 TUB2 tubulin beta chain 2 (.1) AT5G62700 367 / 1e-123 atgcp3, TUB3 tubulin beta chain 3 (.1) AT1G20010 366 / 3e-123 TUB5 tubulin beta-5 chain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G111900 [exp] 856 / 0 AT1G50010 858 / 0.0 tubulin alpha-2 chain (.1) Potri.001G289500 [exp] 853 / 0 AT4G14960 855 / 0.0 Tubulin/FtsZ family protein (.1.2) Potri.009G085100 [exp] 851 / 0 AT1G50010 852 / 0.0 tubulin alpha-2 chain (.1) Potri.003G220300 [exp] 819 / 0 AT5G19780 813 / 0.0 tubulin alpha-5 (.1) Potri.001G004600 [exp] 808 / 0 AT5G19780 809 / 0.0 tubulin alpha-5 (.1) Potri.019G036000 [exp] 807 / 0 AT5G19780 813 / 0.0 tubulin alpha-5 (.1) Potri.013G056800 [exp] 801 / 0 AT5G19780 811 / 0.0 tubulin alpha-5 (.1) Potri.006G095000 [exp] 370 / 8e-125 AT5G23860 852 / 0.0 tubulin beta 8 (.1.2) Potri.009G040200 [exp] 367 / 8e-124 AT5G23860 864 / 0.0 tubulin beta 8 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035422 [exp] 850 / 0 AT1G50010 910 / 0.0 tubulin alpha-2 chain (.1) Lus10031032 [exp] 850 / 0 AT1G50010 910 / 0.0 tubulin alpha-2 chain (.1) Lus10013765 [exp] 820 / 0 AT5G19770 914 / 0.0 tubulin alpha-3 (.1) Lus10039169 [exp] 820 / 0 AT5G19780 914 / 0.0 tubulin alpha-5 (.1) Lus10005705 [exp] 804 / 0 AT5G19780 850 / 0.0 tubulin alpha-5 (.1) Lus10020281 [exp] 804 / 0 AT5G19780 850 / 0.0 tubulin alpha-5 (.1) Lus10035497 [exp] 370 / 9e-125 AT5G62690 824 / 0.0 tubulin beta chain 2 (.1) Lus10002000 [exp] 370 / 9e-125 AT5G62690 824 / 0.0 tubulin beta chain 2 (.1) Lus10026813 [exp] 367 / 1e-123 AT5G12250 867 / 0.0 beta-6 tubulin (.1) Lus10036069 [exp] 367 / 1e-123 AT5G12250 914 / 0.0 beta-6 tubulin (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0566 [poplar] [flax] Tubulin PF00091 [poplar] [flax] Tubulin Tubulin/FtsZ family, GTPase domain CL0442 [poplar] [flax] Tubulin_C PF03953 [poplar] [flax] Tubulin_C Tubulin C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.017G081000.1 pacid=42814069 polypeptide=Potri.017G081000.1.p locus=Potri.017G081000 ID=Potri.017G081000.1.v4.1 annot-version=v4.1 ATGAGAGAGTGCATCTCAATCCACATTGGTCAGGCTGGTATTCAAGTTGGTAATGCCTGCTGGGAACTCTACTGCCTCGAACATGGCATTCAGCCTGATG GGCAGATGCCAGGTGACAAGACTGTTGGGGGAGGAGACGATGCCTTCAACACATTTTTTAGCGAAACTGGGGCTGGGAAGCACGTTCCTCGTGCTGTGTT TTTGGACTTGGAACCAACTGTGATTGACGAGGTCAGGACTGGGGCTTATCGCCAACTATTTCATCCTGAACAACTTATTAGTGGCAAAGAAGATGCTGCC AATAACTTTGCAAGAGGCCACTACACAATTGGGAAAGAGATTGTGGACTTGTGTCTTGACAGGATTAGGAAGCTAGCAGATAACTGTACTGGGCTTCAAG GATTTTTAGTTTTTCATGCTGTTGGTGGGGGTACTGGTTCTGGGCTTGGATCTTTGCTTTTGGAGAGGCTTTCTGTTGATTATGGAAAGAAATCGAAGCT TGGTTTCACCGTTTACCCTTCGCCACAAGTCTCCACCTCTGTGGTCGAGCCTTATAACAGTGTGTTGTCCACTCATTCACTTCTAGAACACACTGATGTT TCTGTGTTGCTTGATAATGAGGCCATCTACGATATTTGCCGCAGATCTCTTGATATTGAGAGACCCACATACACTAATCTCAACAGGCTTGTGTCTCAGG TTATCTCCTCGTTGACAGCATCGCTTCGATTTGATGGAGCATTGAATGTGGATGTGACAGAATTCCAAACCAATTTGGTCCCATACCCTCGAATCCATTT CATGCTTTCTTCATATGCCCCAGTTATCTCTGCAGAGAAGGCCTACCATGAGCAACTCTCTGTCGCTGAAGTGACAAACAGTGCTTTCGAGCCATCTTCA ATGATGGCAAAATGTGACCCTCGCCATGGTAAATACATGGCATGTTGCTTGATGTATAGAGGGGATGTGGTGCCAAAGGATGTGAACGCAGCAGTAGCAA CAATTAAGACCAAGAGGACTATTCAATTTGTTGATTGGTGCCCAACTGGGTTTAAATGTGGTATTAACTACCAGCCTCCTACTGTTGTTCCTGGTGGTGA CTTGGCTAAAGTTCAGAGGGCAGTTTGCATGATTTCAAACTCGACCAGCGTTGCTGAGGTGTTCTCTAGGATCGATCACAAGTTCGATCTCATGTATGCG AAGCGTGCTTTTGTGCATTGGTATGTTGGTGAAGGAATGGAGGAAGGAGAGTTTTCAGAAGCTAGGGAGGATTTGGCTGCTCTGGAAAAGGATTATGAGG AAGTTGGGGCAGAGTCCGCTGAAGGGGAAGACGATGATGGAGAGGAATACATGTAA
AA sequence Show only first row Show all	>Potri.017G081000.1 pacid=42814069 polypeptide=Potri.017G081000.1.p locus=Potri.017G081000 ID=Potri.017G081000.1.v4.1 annot-version=v4.1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAA NNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDV SVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEVTNSAFEPSS MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYA KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGEDDDGEEYM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14960		TUA6	Tubulin/FtsZ family protein (....		Potri.017G081000 [exp]	0	1
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Potri.009G040200 [exp]	2.64	0.9717
AT4G13370			Plant protein of unknown funct...		Potri.018G072500 [exp]	3.46	0.9689
AT5G66230			Chalcone-flavanone isomerase f...		Potri.005G114100 [exp]	4.58	0.9674
AT1G08560		KN, ATSYP111, S...	KNOLLE, syntaxin of plants 11...		Potri.013G053200 [exp]	4.89	0.9659	Pt-SYP111.1
AT3G54560		HTA11	histone H2A 11 (.1)		Potri.002G046400 [exp]	5.47	0.9569
AT5G62550			unknown protein		Potri.015G063700 [exp]	5.65	0.9561
AT2G26760		CYCB1;4, CYC3	Cyclin B1;4 (.1)		Potri.001G272000 [exp]	7.21	0.9672
AT1G76540		CDKB2;1	cyclin-dependent kinase B2;1 (...		Potri.005G257500 [exp]	8.48	0.9628	CDKB2.2
AT2G42260		PYM, UVI4	POLYCHOME, uv-b-insensitive 4 ...		Potri.016G050300 [exp]	9.64	0.9447
AT5G37010			unknown protein		Potri.012G145200 [exp]	9.94	0.9593

Compare expression of checked genes

Potri.017G081000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.