Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28850 355 / 3e-119 Glutaredoxin family protein (.1) AT5G39865 305 / 2e-100 Glutaredoxin family protein (.1) AT3G57070 145 / 7e-39 Glutaredoxin family protein (.1) AT2G41330 140 / 2e-37 Glutaredoxin family protein (.1) AT5G13810 134 / 3e-36 Glutaredoxin family protein (.1) AT5G58530 134 / 4e-36 Glutaredoxin family protein (.1) AT1G64500 128 / 5e-33 Glutaredoxin family protein (.1) AT4G10630 125 / 4e-32 Glutaredoxin family protein (.1) AT1G32760 120 / 8e-31 Glutaredoxin family protein (.1) AT5G03870 118 / 2e-29 Glutaredoxin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G038600 [exp] 170 / 4e-48 AT3G57070 317 / 5e-105 Glutaredoxin family protein (.1) Potri.001G448300 [exp] 156 / 9e-44 AT4G10630 285 / 6e-95 Glutaredoxin family protein (.1) Potri.006G041800 [exp] 155 / 1e-42 AT3G57070 340 / 3e-114 Glutaredoxin family protein (.1) Potri.009G075600 [exp] 137 / 1e-37 AT5G58530 199 / 3e-63 Glutaredoxin family protein (.1) Potri.008G072200 [exp] 135 / 7e-37 AT5G58530 177 / 7e-55 Glutaredoxin family protein (.1) Potri.001G026600 [exp] 134 / 3e-36 AT5G13810 312 / 1e-107 Glutaredoxin family protein (.1) Potri.003G198100 [exp] 132 / 9e-36 AT5G13810 294 / 1e-100 Glutaredoxin family protein (.1) Potri.T125406 [exp] 132 / 9e-36 AT5G13810 294 / 1e-100 Glutaredoxin family protein (.1) Potri.001G280400 [exp] 131 / 3e-35 AT5G58530 234 / 4e-77 Glutaredoxin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007256 [exp] 387 / 2e-132 AT5G39865 358 / 1e-121 Glutaredoxin family protein (.1) Lus10001669 [exp] 220 / 5e-68 AT5G39865 340 / 1e-115 Glutaredoxin family protein (.1) Lus10017335 [exp] 215 / 5e-66 AT5G39865 345 / 1e-117 Glutaredoxin family protein (.1) Lus10008270 [exp] 152 / 5e-42 AT4G10630 305 / 7e-103 Glutaredoxin family protein (.1) Lus10033238 [exp] 150 / 3e-41 AT4G10630 297 / 1e-99 Glutaredoxin family protein (.1) Lus10018025 [exp] 144 / 1e-38 AT3G57070 293 / 2e-96 Glutaredoxin family protein (.1) Lus10003194 [exp] 131 / 5e-34 AT1G64500 322 / 3e-108 Glutaredoxin family protein (.1) Lus10039537 [exp] 128 / 8e-34 AT5G13810 261 / 4e-87 Glutaredoxin family protein (.1) Lus10024164 [exp] 128 / 8e-34 AT5G13810 259 / 2e-86 Glutaredoxin family protein (.1) Lus10042021 [exp] 126 / 2e-32 AT3G57070 252 / 2e-80 Glutaredoxin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF00462 [poplar] [flax] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Potri.017G081600.2 pacid=42814222 polypeptide=Potri.017G081600.2.p locus=Potri.017G081600 ID=Potri.017G081600.2.v4.1 annot-version=v4.1 ATGGGCTGCGGGAGTTCGAAGCAAAAGCGATGCAAGCATTGCCAGTCACCGTACTCACCGCTGCCTCGAAGCTATTCAATGCATGTTGTTCATCCACCAC AGCAAAAGGGCGATAGCTACCATGTGGTGGCACTCACCTCCACCACATTAGGTACACTCGCTCTTGATTCTGCGAATCAGAATGGGACTATTGATGTTAT TGTAAAAGGCGATGATCAATGGAAGAATGTTGGTGATGTTAATGGATCAAATGGGCTTGTAAAGAAGAGTAAAGAATTGAATAGCAAGGAGGAGTTTTCA ACGGGACTGATTGAAGCCAGGACTTGGTCTAATATGATCCAAGAAAAAATCCCAAAAGTTGTTCCAAGGACTCCGATTATGACACCACCTGGAGAGCCAG AAACTATCAATACTTGGGAGTTGATGGCAGGGCTTGAAGATGTGATGAATCCTTGTTCATCTCATCGGTTTCGCAGTTTCTCTTTTGATATTTCTCGTGA TCCAAGTCCAATATCTGATTGTCACAAAACTAATTTTCTGCAGAATGGCAAACTTTCTCCTGATAATATTAAATCTGGGTGGCTTCAAGTTGTAGACGAG GATGCTACTTCCAAATGTCTGGAATTCGATCCTGAAGTCATCTCTACATTTAGAAAATCATTTGAAGAGCTCTCTCCTACACATCCATTTTACATTAAGC CAATTGATAGTGAAAGACAACCTCCTTTTGACAGCGACGATTCTTCGTTGCCTGTGAATGATGCTACGGAGGTAGATTTTGTTGCAAAAGATTGTAAGCG CAGTAAGGATAAGTTAATTGTTTATTTTACAAGCTTGCGAGGGGTGCGCAAAACATACGAGGCTTGTTGCCATGTGAGGGTGATTTTAAAAAGCTTAGGA GTTCGTGTTGATGAACGAGATGTATCAATGCATTCAGGGTTCAAGGAAGAGTTGAGAGAGCTTATGAAAGAAGGGTTTAGCGGGGGAGGGTTACCAAGAG TGTTTATTGGGAGAAAATACATTGGCGGAGCAGAGGAAATTCGGCGAATGCACGAGGAAGGTCTGCTAGAGAAAATGGTTGAAGGGTGTGAAATGTTGGA TGGTGGTGGTGGGGGTGGAGTTGGAGGGGCTTGTGAGGCCTGTGGGGATATCAGGTTTGTGCCTTGTGAGACATGTTCAGGGAGTTGTAAGATATATTGT GAAGGTGACGATGAAGAACTAGAAGAGTTAGAAGAAAGTGAAGAGAGTAATGAATATGGGTTTCAACGTTGCCCTGATTGCAATGAGAATGGACTCATAC GCTGCCCCAGTTGCTGTGACTAG
AA sequence Show only first row Show all	>Potri.017G081600.2 pacid=42814222 polypeptide=Potri.017G081600.2.p locus=Potri.017G081600 ID=Potri.017G081600.2.v4.1 annot-version=v4.1 MGCGSSKQKRCKHCQSPYSPLPRSYSMHVVHPPQQKGDSYHVVALTSTTLGTLALDSANQNGTIDVIVKGDDQWKNVGDVNGSNGLVKKSKELNSKEEFS TGLIEARTWSNMIQEKIPKVVPRTPIMTPPGEPETINTWELMAGLEDVMNPCSSHRFRSFSFDISRDPSPISDCHKTNFLQNGKLSPDNIKSGWLQVVDE DATSKCLEFDPEVISTFRKSFEELSPTHPFYIKPIDSERQPPFDSDDSSLPVNDATEVDFVAKDCKRSKDKLIVYFTSLRGVRKTYEACCHVRVILKSLG VRVDERDVSMHSGFKEELRELMKEGFSGGGLPRVFIGRKYIGGAEEIRRMHEEGLLEKMVEGCEMLDGGGGGGVGGACEACGDIRFVPCETCSGSCKIYC EGDDEELEELEESEESNEYGFQRCPDCNENGLIRCPSCCD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G28850			Glutaredoxin family protein (....		Potri.017G081600 [exp]	0	1
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Potri.017G016700 [exp]	6.55	0.9011
AT2G35680			Phosphotyrosine protein phosph...		Potri.014G045500 [exp]	9.94	0.8403
AT4G26060			Ribosomal protein L18ae family...		Potri.018G050900 [exp]	10.24	0.8352
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Potri.010G193100 [exp]	13.41	0.8520
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Potri.008G077100 [exp]	15.58	0.7937
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Potri.003G155200 [exp]	16.24	0.8545
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Potri.014G070900 [exp]	16.61	0.7903
AT5G24760			GroES-like zinc-binding dehydr...		Potri.004G067000 [exp]	16.61	0.8390
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Potri.009G099800 [exp]	17.02	0.8579	CAM1
AT4G33330		PGSIP3, GUX2	glucuronic acid substitution o...		Potri.014G029900 [exp]	24.49	0.8501

Compare expression of checked genes

Potri.017G081600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.