Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15150 248 / 3e-81 HD ATHB3, HAT7, ATHB-3 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) AT3G01220 244 / 6e-80 HD ATHB20 homeobox protein 20 (.1) AT1G69780 238 / 2e-77 HD ATHB13 Homeobox-leucine zipper protein family (.1) AT1G26960 213 / 4e-68 HD ATHB23 homeobox protein 23 (.1) AT5G65310 144 / 7e-41 HD ATHB-5, ATHB5 homeobox protein 5 (.1.2) AT4G40060 136 / 5e-38 HD ATHB16 ,ATHB-16 homeobox protein 16 (.1) AT2G22430 135 / 1e-37 HD ATHB6 homeobox protein 6 (.1) AT3G01470 133 / 4e-37 HD HD-ZIP-1, HAT5, ATHB1, ATHB-1 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) AT2G46680 103 / 8e-26 HD ATHB7, ATHB-7 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) AT2G36610 100 / 3e-25 HD ATHB22 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 22, homeobox protein 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G148200 [exp] 308 / 6e-105 AT1G69780 333 / 6e-115 Homeobox-leucine zipper protein family (.1) Potri.010G093400 [exp] 297 / 2e-100 AT1G69780 308 / 5e-105 Homeobox-leucine zipper protein family (.1) Potri.012G070900 [exp] 145 / 3e-41 AT3G01470 145 / 1e-41 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.002G100600 [exp] 142 / 2e-40 AT4G40060 191 / 1e-59 homeobox protein 16 (.1) Potri.015G065400 [exp] 140 / 2e-39 AT3G01470 136 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.005G071900 [exp] 137 / 7e-38 AT2G22430 248 / 6e-81 homeobox protein 6 (.1) Potri.007G097100 [exp] 136 / 8e-38 AT2G22430 250 / 9e-82 homeobox protein 6 (.1) Potri.005G161500 [exp] 125 / 3e-34 AT4G40060 187 / 4e-58 homeobox protein 16 (.1) Potri.008G194400 [exp] 121 / 4e-32 AT5G15150 122 / 1e-32 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036730 [exp] 257 / 8e-85 AT1G69780 325 / 9e-112 Homeobox-leucine zipper protein family (.1) Lus10037200 [exp] 249 / 2e-81 AT1G69780 319 / 2e-109 Homeobox-leucine zipper protein family (.1) Lus10012845 [exp] 245 / 2e-80 AT1G69780 280 / 1e-94 Homeobox-leucine zipper protein family (.1) Lus10030493 [exp] 244 / 3e-80 AT1G69780 288 / 1e-97 Homeobox-leucine zipper protein family (.1) Lus10042180 [exp] 135 / 2e-37 AT3G01470 159 / 6e-47 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10022225 [exp] 133 / 9e-37 AT3G01470 270 / 2e-90 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10036674 [exp] 132 / 2e-36 AT3G01470 153 / 8e-45 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10008795 [exp] 132 / 3e-36 AT3G01470 261 / 3e-87 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10023159 [exp] 132 / 3e-36 AT4G40060 220 / 1e-70 homeobox protein 16 (.1) Lus10033102 [exp] 131 / 5e-36 AT3G01470 151 / 4e-44 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain CL0123 [poplar] [flax] PF02183 [poplar] [flax] HALZ Homeobox associated leucine zipper
Representative CDS sequence Show only first row Show all	>Potri.017G081700.1 pacid=42814562 polypeptide=Potri.017G081700.1.p locus=Potri.017G081700 ID=Potri.017G081700.1.v4.1 annot-version=v4.1 ATGAATGAAAGATCTTTTGCGCTGAGTGATCATCAACATCATATGGCATTTCCTCCACATCATGGTTTTATGTTCCATTCCCATGAAGACAATGACCACC ATCCCTCTCCTTCTTCTCTCAACTCTCTTCCCTCCTGCCCTCCTCAGCTTTTTCCCGGAAGTGGAGGGCAGTTCTTGATGAAGAGATCGATGTCGTTTTC TGGAATGGAAAAATGTGAAGAAGTAGGGCATGGAGAAGATGACTTGTCTGATGATGGGTCACAGATAGGGGAGAAAAAGAAGAGGCTCAACTTGGAGCAA GTTAAGGCACTTGAGAAGAGCTTTGAGTTAGGAAACAAGCTTGAACCTGAGAGGAAAATGCAGCTGGCCAAGGCTTTGGGTTTGCAGCCAAGGCAGATAG CTATTTGGTTTCAAAACAGGAGGGCTAGATGGAAGACTAAGCAGTTAGAGAAAGACTATGAGGTCTTAAAGAAACAGTTTGATGCACTTAAGGCTGATAA TGATGCCCTTCAAGCCCAGAACAAGAAACTTCATGCAGAGCTACTGTCTCTAAAAAGTAGAGAATCAAATGAAGTTAACCTCAAGAAAGAAACTGAGGGT TCTTGGAGCAATGGAAGTGAGAACAGTTGTGATGTCAACTTAGATATCTCAAGAAATCCAGTAGCATCAAGTCCCGTATCATCCCAACTAACCACTAAAC ATCTCTTCTCCGCACCCATCAGGCCTGCAACCATCACTCAACTTCTCCAAGGTTCATCAAGATCAGACCTTCAATGTTTGAAGGTTGATCAGTTGATTCA TCAAGATGAAAACTTCTGCAGCATGTTCAATGGCATAGAGGAGCAGCAAGGATTTTGGCCATGGCCTGAGCAACAGCATGCTACATTTTCATTGAACCAA GCTCAGTTCTCCAACAATTAG
AA sequence Show only first row Show all	>Potri.017G081700.1 pacid=42814562 polypeptide=Potri.017G081700.1.p locus=Potri.017G081700 ID=Potri.017G081700.1.v4.1 annot-version=v4.1 MNERSFALSDHQHHMAFPPHHGFMFHSHEDNDHHPSPSSLNSLPSCPPQLFPGSGGQFLMKRSMSFSGMEKCEEVGHGEDDLSDDGSQIGEKKKRLNLEQ VKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKDYEVLKKQFDALKADNDALQAQNKKLHAELLSLKSRESNEVNLKKETEG SWSNGSENSCDVNLDISRNPVASSPVSSQLTTKHLFSAPIRPATITQLLQGSSRSDLQCLKVDQLIHQDENFCSMFNGIEEQQGFWPWPEQQHATFSLNQ AQFSNN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15150	HD	ATHB3, HAT7, AT...	HOMEOBOX FROM ARABIDOPSIS THAL...		Potri.017G081700 [exp]	0	1
AT5G14920			Gibberellin-regulated family p...		Potri.001G350600 [exp]	1.41	0.9518
AT1G14820			Sec14p-like phosphatidylinosit...		Potri.010G105400 [exp]	4.00	0.9674
AT5G50570	SBP	SPL13, SPL13A	SQUAMOSA PROMOTER-BINDING PROT...		Potri.003G169400 [exp]	5.56	0.9211
AT3G50170			Plant protein of unknown funct...		Potri.016G039601 [exp]	6.00	0.9320
AT2G45260			Plant protein of unknown funct...		Potri.013G155400 [exp]	10.39	0.9459
AT3G62630			Protein of unknown function (D...		Potri.005G019600 [exp]	11.09	0.9160
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Potri.012G022500 [exp]	13.03	0.9338
AT3G50170			Plant protein of unknown funct...		Potri.016G039600 [exp]	13.07	0.9043
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G008000 [exp]	15.65	0.9452
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Potri.007G119700 [exp]	16.15	0.8850

Compare expression of checked genes

Potri.017G081700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.