Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39840 1050 / 0 ATP-dependent RNA helicase, mitochondrial, putative (.1) AT4G14790 406 / 2e-132 ATSUV3, EDA15 embryo sac development arrest 15, ATP-dependent RNA helicase, mitochondrial (SUV3) (.1) AT3G46960 49 / 1e-05 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT1G70070 49 / 2e-05 ISE2, EMB25, PDE317 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) AT2G06990 47 / 7e-05 HEN2 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT1G59760 46 / 0.0001 AtMTR4 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G084100 [exp] 415 / 1e-135 AT4G14790 770 / 0.0 embryo sac development arrest 15, ATP-dependent RNA helicase, mitochondrial (SUV3) (.1) Potri.009G041200 [exp] 49 / 1e-05 AT3G46960 1988 / 0.0 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.006G078000 [exp] 47 / 9e-05 AT2G06990 1634 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.004G228700 [exp] 46 / 0.0001 AT1G59760 1581 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.018G146001 [exp] 44 / 0.0004 AT2G06990 972 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033404 [exp] 1095 / 0 AT5G39840 1034 / 0.0 ATP-dependent RNA helicase, mitochondrial, putative (.1) Lus10034867 [exp] 142 / 7e-40 AT5G39840 169 / 1e-50 ATP-dependent RNA helicase, mitochondrial, putative (.1) Lus10034868 [exp] 131 / 5e-36 AT5G39840 112 / 3e-30 ATP-dependent RNA helicase, mitochondrial, putative (.1) Lus10017528 [exp] 50 / 1e-05 AT3G46960 1971 / 0.0 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10024454 [exp] 46 / 0.0001 AT1G59760 1557 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10027599 [exp] 45 / 0.0002 AT2G06990 1633 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10013294 [exp] 44 / 0.0008 AT1G70070 1372 / 0.0 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] PF12513 [poplar] [flax] SUV3_C Mitochondrial degradasome RNA helicase subunit C terminal
Representative CDS sequence Show only first row Show all	>Potri.017G081900.3 pacid=42813997 polypeptide=Potri.017G081900.3.p locus=Potri.017G081900 ID=Potri.017G081900.3.v4.1 annot-version=v4.1 ATGGCTGGAGGCCCTTTTACCTCATTGTTTAGAATCTTTGCATCAAGAAACAATGTTCACAGTGCTAGAGTTTTGCTTTCAAATCAAAATTTCCGTTCTA TGAGACAATTTAACAACTGGGTTTTAGAAACTCATCAGTTTAGTACCTCTTTTGATGTTCCTTGCCGGCAATTTTCAACTAGTTTAGTAGACAACATTCA TTCTCACTCACCTTTAAAGAACCCACAATTTACCATTTTTAATCCTGCTGATGCGAGGCCGTTTTCTTCATCTGTCGATGATGAGGATGGTAATAGAGTG AAATTGAATGAGAATAAAAGTTTGGATTCTGTAGAGAATGGTGGTCTTGAAGGTGTTGATGGGAATAGTGTTGGTGCGGGTGATGATAACGAGAGTTGCG TTTGTGATTCTATGGTTATTGAAGAGAAACAAAGTGATGGTGTTGAGGGTGGGAATAATGTTGTGGGGAAAAAGAATTTGGCATTTCGTGACCCTGTAGA GTTGTATCGGGAGCTTCTTACTGCTGAAAAGAATGATAATTTGAAGCGATCGGATTGGGATACTTTACAAGAGATATTCTCTTGTTTTTCAAAATCGGGC TGGGCAGCTAATCAGGCTCTTGGCATTTATATTGGCAAGTCATATTTCCATACTGCTGTCAATCGGTTCAGGAACTTTTTCTTTAAGAAATGTTCTGCTG AGCTTGCTATGCACTTGGTGTCACTAGGTGCATCGGATAAGGCTGTTAGGTTCCTTTTCCCAATATTTGTTGAGTATTGTATAGAAGAGTTTCCTGATGA GATCAAGCGGTTTCGGAATATGATTTCCTCAGCAGATCTTACAAAGCCACACACATGGTTCCCTTTTGCACGAGCAATGAAACGAAAGATCATATATCAT TGTGGTCCAACAAACAGTGGTAAAACTTATAATGCATTGCAAAAATTTATGGAAGCAAAGAAGGGTATTTATTGTAGTCCACTCAGGCTGTTAGCCATGG AAGTTTTTGACAAGGTCAATGCTCTTGGGGTTTACTGTAGTCTCTATACTGGGCAAGAGAAGAAACACGTGCCATTTTCCAATCATATTGCTTGTACTGT GGAAATGGTGTCAACTGAGGAACTGTATGATGTGGCTGTTATTGATGAGATCCAGATGATGGCTGATTCATGCAGAGGCTATGCATGGACGAGAGCATTA CTTGGTTTGAAGGCTGATGAAATTCATTTGTGTGGAGATCCTAGTGTTCTGGATATTGTTAAAAATATCTGTTCAGAAACTGGAGATGAATTGTATGAAC AACATTATGAGAGATTCAAACCGTTAGTGGTTGAAGCCAAAACTCTGTTGGGAGATCTTAAAAATGTACGATCTGGGGATTGTATTGTTGCATTTTCAAG AAGAGAGATATTCGAGGTGAAAATGGCAATTGAAAAACACACCAATCATCGTTGTTGTGTTATTTATGGGGCCTTACCACCAGAGACTCGTAGGCAGCAA GCTAACTTGTTCAATGATCAGGATAACGAGTATGATGTGCTGGTTGCAAGTGATGCTGTGGGGATGGGTTTGAATCTGAACATTAGAAGAGTAGTTTTTA ATAGCCTTTCAAAGTACAATGGTGACAAGATTGTTCCAGTACCACCATCACAGGTGAAGCAGATTGCTGGAAGAGCTGGTAGAAGAGGAAGTCGGTATCC AGATGGACTCACAACCACCTTGCAATTAGAGGATTTGGATTACTTGATTGATTGTTTGAAGCAACCTTTCGAGAATGTCAAGAAAGTGGGTCTCTTTCCT TTCTTTGAGCAGGTTGAATTGTTTGCTGGACAGCTGCCAGATATTAGTTTTGCTCATTTGCTTGAAAAGTTTGGTGAAAATTGCCGTCTTGATGGCTCAT ACTTCTTGTGTCGGCATGATCATATAAAGAAGGTGGCAAATATGTTGGAGAAAGTTCAGGGATTATCTTTGGAAGACCGATTCAACTTTTGCTTCGCTCC AGTTAATTTCAGAGACCCAAAAGCAATGTACCATCTTCATAGGTTTGCTGCACTGTATAGCATAAAGGTCCCTGTTAGTATAGCAATGGGCATGCCAAAG GGATCTGCTCGGAATGATGCAGAACTCCAAGATCTCGAGACTAAACATCAAGTTTTATCCGTGTATCTATGGTTGTCCCAGCACTTCAAAAAAGAAATTT TTCCATATAAGAAAAAGGCTGAGGAAATGGCAATAGATATCGCAGATTTATTGGGCCAATCTCTCATCAAGGCTTGCTGGAAACCAGAATCAAGGCAGGG AGGGAATCCAAGGCCTCAACAGAAGGAAGATGGTCATGAGAGGCACAAAGGAGATGGTTACAGGAGGCCTAACTCACTTGTCAAGATTTATGAAAAGAAA AGGCAAGAAAAAGAGTTGCTGCAGGGGCATTCACAGAAGGTCGTTGTATAG
AA sequence Show only first row Show all	>Potri.017G081900.3 pacid=42813997 polypeptide=Potri.017G081900.3.p locus=Potri.017G081900 ID=Potri.017G081900.3.v4.1 annot-version=v4.1 MAGGPFTSLFRIFASRNNVHSARVLLSNQNFRSMRQFNNWVLETHQFSTSFDVPCRQFSTSLVDNIHSHSPLKNPQFTIFNPADARPFSSSVDDEDGNRV KLNENKSLDSVENGGLEGVDGNSVGAGDDNESCVCDSMVIEEKQSDGVEGGNNVVGKKNLAFRDPVELYRELLTAEKNDNLKRSDWDTLQEIFSCFSKSG WAANQALGIYIGKSYFHTAVNRFRNFFFKKCSAELAMHLVSLGASDKAVRFLFPIFVEYCIEEFPDEIKRFRNMISSADLTKPHTWFPFARAMKRKIIYH CGPTNSGKTYNALQKFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLYTGQEKKHVPFSNHIACTVEMVSTEELYDVAVIDEIQMMADSCRGYAWTRAL LGLKADEIHLCGDPSVLDIVKNICSETGDELYEQHYERFKPLVVEAKTLLGDLKNVRSGDCIVAFSRREIFEVKMAIEKHTNHRCCVIYGALPPETRRQQ ANLFNDQDNEYDVLVASDAVGMGLNLNIRRVVFNSLSKYNGDKIVPVPPSQVKQIAGRAGRRGSRYPDGLTTTLQLEDLDYLIDCLKQPFENVKKVGLFP FFEQVELFAGQLPDISFAHLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNFRDPKAMYHLHRFAALYSIKVPVSIAMGMPK GSARNDAELQDLETKHQVLSVYLWLSQHFKKEIFPYKKKAEEMAIDIADLLGQSLIKACWKPESRQGGNPRPQQKEDGHERHKGDGYRRPNSLVKIYEKK RQEKELLQGHSQKVVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39840			ATP-dependent RNA helicase, mi...		Potri.017G081900 [exp]	0	1
					Potri.010G080666 [exp]	13.37	0.9702
					Potri.010G007402 [exp]	19.33	0.9674
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Potri.004G115500 [exp]	30.57	0.9660
AT5G62490		ATHVA22B	ARABIDOPSIS THALIANA HVA22 HOM...		Potri.014G148600 [exp]	34.49	0.8669
					Potri.012G055401 [exp]	40.39	0.9083
AT4G33230			Plant invertase/pectin methyle...		Potri.003G021300 [exp]	46.07	0.9227
AT3G21490			Heavy metal transport/detoxifi...		Potri.010G015300 [exp]	61.72	0.8506
AT3G56180			Protein of unknown function (D...		Potri.010G182300 [exp]	83.18	0.9660
AT5G15110			Pectate lyase family protein (...		Potri.017G078400 [exp]	94.74	0.9660
					Potri.001G169351 [exp]	100.48	0.9660

Compare expression of checked genes

Potri.017G081900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.