Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26870 298 / 6e-98 NAC FEZ, ANAC009 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G39820 293 / 6e-97 NAC ANAC094 NAC domain containing protein 94 (.1) AT2G43000 216 / 7e-68 NAC ANAC042, JUB1, JUNGBRUNNEN1 NAC domain containing protein 42 (.1) AT3G12910 190 / 2e-57 NAC NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G15510 186 / 3e-55 NAC ATNAC2, ANAC056, NARS1 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) AT1G61110 181 / 8e-54 NAC ANAC025 NAC domain containing protein 25 (.1) AT3G04070 181 / 1e-53 NAC ANAC047 NAC domain containing protein 47 (.1.2) AT2G02450 182 / 2e-53 NAC LOV1, ANAC034, ANAC035 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) AT4G27410 177 / 9e-53 NAC RD26, ANAC072 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT1G69490 175 / 5e-52 NAC NAP, ANAC029, ATNAP Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G126901 [exp] 689 / 0 AT5G39820 305 / 1e-101 NAC domain containing protein 94 (.1) Potri.001G080900 [exp] 226 / 2e-71 AT2G43000 257 / 3e-85 NAC domain containing protein 42 (.1) Potri.003G149700 [exp] 223 / 3e-70 AT2G43000 245 / 2e-80 NAC domain containing protein 42 (.1) Potri.007G066300 [exp] 219 / 9e-69 AT3G12910 269 / 2e-89 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.002G057200 [exp] 218 / 2e-68 AT2G43000 282 / 4e-95 NAC domain containing protein 42 (.1) Potri.005G205400 [exp] 218 / 5e-68 AT2G43000 269 / 6e-90 NAC domain containing protein 42 (.1) Potri.005G098000 [exp] 213 / 4e-66 AT3G12910 271 / 2e-90 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.011G046700 [exp] 194 / 3e-58 AT1G61110 331 / 8e-113 NAC domain containing protein 25 (.1) Potri.004G038000 [exp] 193 / 4e-58 AT1G61110 332 / 3e-113 NAC domain containing protein 25 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007263 [exp] 337 / 6e-114 AT5G39820 300 / 3e-100 NAC domain containing protein 94 (.1) Lus10015367 [exp] 322 / 5e-108 AT1G26870 298 / 8e-99 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10036749 [exp] 313 / 3e-103 AT1G26870 306 / 4e-100 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10037178 [exp] 303 / 4e-99 AT5G39820 306 / 3e-101 NAC domain containing protein 94 (.1) Lus10030478 [exp] 293 / 1e-95 AT5G39820 297 / 4e-98 NAC domain containing protein 94 (.1) Lus10031189 [exp] 215 / 2e-66 AT3G12910 264 / 9e-87 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10031767 [exp] 209 / 7e-66 AT2G43000 236 / 3e-78 NAC domain containing protein 42 (.1) Lus10038332 [exp] 198 / 6e-61 AT2G43000 231 / 1e-75 NAC domain containing protein 42 (.1) Lus10030446 [exp] 191 / 3e-58 AT1G69490 302 / 2e-103 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Lus10007410 [exp] 191 / 3e-57 AT3G15510 241 / 1e-78 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.017G082000.1 pacid=42813184 polypeptide=Potri.017G082000.1.p locus=Potri.017G082000 ID=Potri.017G082000.1.v4.1 annot-version=v4.1 ATGGAAGAGAAGAATGATGTAGATAAGATTGATGATGTGATGTTGCCTGGTTTTCGGTTTCATCCAACTGATGAAGAGCTTGTTGGGTTCTACCTCAAAA GAAAGATCCAGCAGCGATCTCTTCCTATTGAGCTGATCAAGCAAGTTGATATTTATAAATATGATCCTTGGGATCTTCCAAAAGAGCTGGCGACTACAGG AGAGAAAGAGTGGTACTTTTACTGCCCAAGGGACCGTAAATACAGGAACAGTGCAAGGCCAAATAGAGTTACTGGAGCTGGGTTTTGGAAGGCGACTGGA ACAGACCGTCCTATTTACTCCTCTGATGGCACCAGGTGCATAGGCTTGAAGAAGTCCCTGGTGTTCTACAGAGGTCGAGCTGCTAAAGGGATGAAAACTG ACTGGATGATGCACGAATTCCGGCTTCCTTCTCTTGCTGAACCACCACCACCAAAGAAGCTCCTAGACAAAAGCCTTCCTCCAAACGATGCATGGGCTAT TTGTAGGATATTCAAGAAAACCAACTCCATGGCACAAAGAGCTCTTTCTCACTCTTGGGTCTCTCCAGTATTACCAGAGACTACAGCTTCTGATTTTTTC GCCCAAGGGGCACACTGCACTCAGTTCAGTTCAGAGAACATGTCATGCACAACTGAAATAGGATCAAATTTCCATTTAGGCTCCAATAATGACTTCCAGC AGGCCTCTCCTGCTGGTCTCTCTGTTTTAGACATCCCCTCTTACAGGCCCATTAATCCTATAGTCCACACATCATATATATTCCCTGTATCAAACGGTGA TCTTCCCAACAACTTCTTGTTTTCACCCCTCGAGAATTCGGGTCCCATCAAGTCTACAGATGATGCTCCTTCCATGCTATTGAATCCTGCATTGATGGGT GAAGCTGGTAAAGCTTCTGAGAGCACAGAATATGAAGGGTCACAACAGCAGTTCAATGGATTCTCGATCAATTTGCTCCAAGAAATGCAAGGTGATATAG GCACAGGAGATGAGACAGGCTTGAGAAAGAATCCAAGTTCAATTCAAGATAATAACCTTTTTGGGACTATCCGGTCCATCGGATTCCCCTTCAGCTTGCC TTCAAACCTGCCTGATGCATGGAAGTCTAACCTGCCATGGGATTCACCATCCTGCCCCAGTGAGATGTCCACCACTTATTCCACAAACAAATGCCATACT TAA
AA sequence Show only first row Show all	>Potri.017G082000.1 pacid=42813184 polypeptide=Potri.017G082000.1.p locus=Potri.017G082000 ID=Potri.017G082000.1.v4.1 annot-version=v4.1 MEEKNDVDKIDDVMLPGFRFHPTDEELVGFYLKRKIQQRSLPIELIKQVDIYKYDPWDLPKELATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATG TDRPIYSSDGTRCIGLKKSLVFYRGRAAKGMKTDWMMHEFRLPSLAEPPPPKKLLDKSLPPNDAWAICRIFKKTNSMAQRALSHSWVSPVLPETTASDFF AQGAHCTQFSSENMSCTTEIGSNFHLGSNNDFQQASPAGLSVLDIPSYRPINPIVHTSYIFPVSNGDLPNNFLFSPLENSGPIKSTDDAPSMLLNPALMG EAGKASESTEYEGSQQQFNGFSINLLQEMQGDIGTGDETGLRKNPSSIQDNNLFGTIRSIGFPFSLPSNLPDAWKSNLPWDSPSCPSEMSTTYSTNKCHT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26870	NAC	FEZ, ANAC009	FEZ, Arabidopsis NAC domain co...		Potri.017G082000 [exp]	0	1
AT5G41810			unknown protein		Potri.001G093500 [exp]	3.16	0.8511
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Potri.014G159700 [exp]	7.00	0.8118
AT1G53440			Leucine-rich repeat transmembr...		Potri.003G025566 [exp]	7.34	0.8491
AT3G17080			Plant self-incompatibility pro...		Potri.010G008300 [exp]	8.12	0.7987
AT4G31250			Leucine-rich repeat protein ki...		Potri.006G279300 [exp]	9.74	0.7861
AT1G53440			Leucine-rich repeat transmembr...		Potri.001G385400 [exp]	11.83	0.8459
AT1G11330			S-locus lectin protein kinase ...		Potri.011G037900 [exp]	14.96	0.7619
AT4G22530			S-adenosyl-L-methionine-depend...		Potri.007G101800 [exp]	16.12	0.7719
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Potri.006G207300 [exp]	16.97	0.8112	ILR1.1
					Potri.011G107500 [exp]	17.54	0.7690

Compare expression of checked genes

Potri.017G082000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.