Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39785 464 / 1e-154 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) AT1G69610 298 / 2e-90 Protein of unknown function (DUF1666) (.1) AT3G20260 138 / 6e-35 Protein of unknown function (DUF1666) (.1) AT1G73850 103 / 1e-22 Protein of unknown function (DUF1666) (.1) AT3G01175 86 / 2e-17 Protein of unknown function (DUF1666) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G126800 [exp] 792 / 0 AT5G39785 462 / 2e-154 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Potri.017G084200 [exp] 145 / 2e-36 AT3G01175 140 / 1e-36 Protein of unknown function (DUF1666) (.1) Potri.008G004400 [exp] 143 / 2e-36 AT3G20260 426 / 3e-147 Protein of unknown function (DUF1666) (.1) Potri.015G046900 [exp] 125 / 8e-30 AT1G73850 416 / 2e-138 Protein of unknown function (DUF1666) (.1) Potri.012G056400 [exp] 107 / 8e-24 AT1G73850 397 / 5e-131 Protein of unknown function (DUF1666) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015368 [exp] 499 / 2e-166 AT5G39785 445 / 3e-148 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Lus10007264 [exp] 463 / 1e-152 AT5G39785 411 / 2e-135 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Lus10037176 [exp] 352 / 1e-110 AT5G39785 334 / 4e-106 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Lus10036751 [exp] 350 / 5e-110 AT5G39785 328 / 7e-104 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Lus10034809 [exp] 133 / 5e-33 AT3G20260 487 / 3e-171 Protein of unknown function (DUF1666) (.1) Lus10033354 [exp] 124 / 3e-30 AT3G20260 462 / 5e-162 Protein of unknown function (DUF1666) (.1) Lus10038936 [exp] 107 / 4e-24 AT1G73850 457 / 4e-155 Protein of unknown function (DUF1666) (.1) Lus10027226 [exp] 105 / 5e-23 AT1G73850 455 / 5e-153 Protein of unknown function (DUF1666) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07891 [poplar] [flax] DUF1666 Protein of unknown function (DUF1666)
Representative CDS sequence Show only first row Show all	>Potri.017G082300.3 pacid=42814518 polypeptide=Potri.017G082300.3.p locus=Potri.017G082300 ID=Potri.017G082300.3.v4.1 annot-version=v4.1 ATGGGTTCTGTTAATGGGTTTCTTTATAGAAAATTGCTTCCTTTTGCCTCCTCTTTCTGGCTCTCTGTCTCCACTCTGTTCCTTGCTCTCTTTGGTTTCT TCAATAGAACCATGTTCAGATTTAAGAGTAATAATTTGGAGCCAGAAGGTGAGGCTAAGGTACCAGAAGTTGAAGTTTCTGAATTTAAGGAAATAAAAGA AATTGATGAGCTGGATGAAAAAGAAATACCAAGTGAAGCTAAGGAACCAGAAGTTGAAGTTTACGAATTTAAGGAGACGAAAGAAGTTGATGAATTAAAA GAAAAGGAAACACCAAAGTTCTTCTTCAAATTTCAGTTTCAAACTTATAGAGAGGAAGATGAGCCTGTTGTCTTGAGTTCGGTGACTCCTGCAAGCACCA ACAAGTATGAATTCTTGTCAGGGAAGAATTTCAGTCATTACTTGGAGGAGCCAGAGGTTGTTAGTCTTACCGTGAAAGAGTTATATGCTGATTCTGATGG TGATTCTATTGACTATAAGGAGAAGATGGAGAGTGGGGTTTTATCTGATAAGGACTTTGCCAAAAAAGAATCAGAAGCAGAATCTGTTCGTGAGGAAATA GAAGAGATTTCTGCACATAGTGTGCGTGAGCAAGACGCTAAAATGGAGTTCGAGGTGGAAACATCGATAGAAGAGGAGGCAGGGAAGCTTGAGGAAGAAA ATTGCATTGAAGAGTCTATTTCAAGGAAGGGGAAAGCAGTTGTTGTGGAGAACAATGTGTCGAGTGATGGAGATGTTTCAAGAGATGATGATGCTCAATT TCTTTCAGACATGGACTTGATTGTTTCTGATTCTGATTCTGATTCTGTTGTTTCAAACCATGAATTTATGAGTCGTTGTGTAGCTTCAACCAGTGATGGG TTCTTGTCAGATAAAGACTTTGAAGATGTATTTGAACTTGATATTTTGAAGGATATTCATGGACAGACGGTGGAATCAACTGATGAAGATTTGGAATTAG AGTATTTAAATCTGCAAAACTTGAATTCTGGTTACGAGGCTGATGATTTTGATGACGAAGATAGTGACATAATGGAAGAGCTTAAAAATATAGAAGAGGC TGTGCAGAAACCAGCAATAGTAGAGGACACAGAAATGGTGTCTGAGAGAGACTTTGAAGACAACAACATGTCCAATAGAAAAGAACGTGGCTCCGAAGAC AATGAAGCCAAGGATATTTTAGAAAATCCAAAGTCCAATTCACAGGATTCCTCGGCTGCAGATTCCGAGGATTCAAATGGCTTGGAAACCTTATGGGAGC ATCAAGATTTGATAGAACAGCTCAAGATGGAGTTGAAAAAGGTCAGAGCAACAGGTCTGCCAACCATCTTAGAAGAAGACGAATCACCAAAAATAATGGA AGATTTGAAGCCATGGAAAATCGATGAGAAGTTCCAGCATGAAGATAGAATGAGTGAGCTTCACAAGTTCTACAAGAGTTATAGAGAGAGGATGCGAAAA CTCGATATCTTGAGTTACCAGAAGGTGTATGCAATGAACTTACTTCAGTCAAAGGACCCCCTTCAATCGATTGCAAGGCATGAAGCGTCAGCTCCAGCAT TGACATCCCTTCTTCCACAGAAATTCCTGCTAAGCAAGCGCAGAAAGTCCAGTTCTGACCCGATGATGAACTTTGTTAGGGAATATCATAATGATTTGGA AGTTGTGTATGTTGGGCAACTCTGCCTTTCATGGGAAATCCTTCATTGGCAGTATGAAAAGGCACTCGAGCTATGGGATTCCGACCCTTATGGGATGCGA CAGTACAATGAAGTTGCTGGTGAATTTCAACAGTTTCAAGTGATATTGCAAAGATTTATAGAGAATGAACCTTTTGAAGGTCCACGGGTGAAAAATTACA TTAAGAATCGATACGTGTTGCGTAATCTCCTTCAAGTTCCGGTAATAAAAGAGGACAGTATGAAGGATAAAAAGGCAAGACGAAAAGGAAGGGATGATGG TTCTATTACAAGTGATATGCTAGTAGAGATAATGGAAGAATCAATAAGGATTTTTTGGCGATTTGTTCGATCTGATAAAGATGCACAAAACGTGATTTCA AAGGGTCGCAAAGGAACTCAAATAGAGCCCCAAGATCCCACTGAACTAGAGTTATTGACAGAGGTGCGAACGAATTTCCAAAAGAAGGAGAGGAGGCTTA AAGACGTCTTGAGAAGTGGAAACTGCATACTGAAGAAGTTCCAAAAACATCGAGAGGACAATTCTAATCAAGTTCTTTACTTCTTCTCTCAAGTGGATAT GAAGTTAGTAGCGAGGGTTCTGAGCATGTCCAGAGTAACAACAGACCAGCTACTATGGTGTCACAATAAATTAAGCAAGATAAATTTTGTTAGCCGGAAG ATACACGTAGAGCCATCATTTTTGCTTTTTCCATCATGA
AA sequence Show only first row Show all	>Potri.017G082300.3 pacid=42814518 polypeptide=Potri.017G082300.3.p locus=Potri.017G082300 ID=Potri.017G082300.3.v4.1 annot-version=v4.1 MGSVNGFLYRKLLPFASSFWLSVSTLFLALFGFFNRTMFRFKSNNLEPEGEAKVPEVEVSEFKEIKEIDELDEKEIPSEAKEPEVEVYEFKETKEVDELK EKETPKFFFKFQFQTYREEDEPVVLSSVTPASTNKYEFLSGKNFSHYLEEPEVVSLTVKELYADSDGDSIDYKEKMESGVLSDKDFAKKESEAESVREEI EEISAHSVREQDAKMEFEVETSIEEEAGKLEEENCIEESISRKGKAVVVENNVSSDGDVSRDDDAQFLSDMDLIVSDSDSDSVVSNHEFMSRCVASTSDG FLSDKDFEDVFELDILKDIHGQTVESTDEDLELEYLNLQNLNSGYEADDFDDEDSDIMEELKNIEEAVQKPAIVEDTEMVSERDFEDNNMSNRKERGSED NEAKDILENPKSNSQDSSAADSEDSNGLETLWEHQDLIEQLKMELKKVRATGLPTILEEDESPKIMEDLKPWKIDEKFQHEDRMSELHKFYKSYRERMRK LDILSYQKVYAMNLLQSKDPLQSIARHEASAPALTSLLPQKFLLSKRRKSSSDPMMNFVREYHNDLEVVYVGQLCLSWEILHWQYEKALELWDSDPYGMR QYNEVAGEFQQFQVILQRFIENEPFEGPRVKNYIKNRYVLRNLLQVPVIKEDSMKDKKARRKGRDDGSITSDMLVEIMEESIRIFWRFVRSDKDAQNVIS KGRKGTQIEPQDPTELELLTEVRTNFQKKERRLKDVLRSGNCILKKFQKHREDNSNQVLYFFSQVDMKLVARVLSMSRVTTDQLLWCHNKLSKINFVSRK IHVEPSFLLFPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39785			Protein of unknown function (D...		Potri.017G082300 [exp]	0	1
AT5G11310			Pentatricopeptide repeat (PPR)...		Potri.006G247400 [exp]	1.00	0.8725
AT5G28740			Tetratricopeptide repeat (TPR)...		Potri.011G043812 [exp]	2.23	0.8242
AT1G01840			unknown protein		Potri.014G077000 [exp]	3.46	0.8178
AT5G17510			unknown protein		Potri.013G076800 [exp]	5.74	0.8314
AT2G17030			F-box family protein with a do...		Potri.002G014500 [exp]	6.32	0.8119
AT3G59670			unknown protein		Potri.005G144800 [exp]	10.24	0.8173
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Potri.016G089000 [exp]	12.16	0.8255
AT4G01280	MYB		Homeodomain-like superfamily p...		Potri.014G089300 [exp]	12.48	0.8034
AT3G53270			Small nuclear RNA activating c...		Potri.006G065800 [exp]	17.20	0.7694
AT4G17900			PLATZ transcription factor fam...		Potri.019G051200 [exp]	17.49	0.7975

Compare expression of checked genes

Potri.017G082300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.