Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28917 97 / 6e-28 ZF_HD MIF2 mini zinc finger 2 (.1) AT1G74660 82 / 8e-22 ZF_HD MIF1 mini zinc finger 1 (.1) AT1G18835 80 / 3e-21 ZF_HD MIF3 mini zinc finger 3, mini zinc finger (.1) AT1G14440 64 / 2e-13 ZF_HD ATHB31, ZHD4 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) AT2G02540 58 / 2e-11 ZF_HD ATHB21, ZFHD4, ZHD3 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) AT4G24660 55 / 2e-10 ZF_HD ATHB22, MEE68, ZHD2 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) AT3G50890 54 / 8e-10 ZF_HD ATHB28, ZHD7 ZINC FINGER HOMEODOMAIN 7, homeobox protein 28 (.1) AT2G18350 53 / 2e-09 ZF_HD ATHB24, ZHD6 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) AT5G15210 53 / 2e-09 ZF_HD ATHB30, ZFHD3, ZHD8 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1) AT3G28920 52 / 2e-09 ZF_HD ATHB34, ZHD9 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G126600 [exp] 112 / 2e-33 AT3G28917 129 / 5e-40 mini zinc finger 2 (.1) Potri.005G158800 [exp] 59 / 1e-11 AT4G24660 204 / 1e-65 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.002G102900 [exp] 58 / 3e-11 AT4G24660 209 / 9e-68 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Potri.003G000400 [exp] 57 / 5e-11 AT1G14440 238 / 9e-78 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) Potri.004G229600 [exp] 56 / 1e-10 AT1G14440 244 / 1e-79 ZINC FINGER HOMEODOMAIN 4, homeobox protein 31 (.1.2) Potri.004G135100 [exp] 56 / 1e-10 AT2G02540 213 / 4e-68 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Potri.007G024100 [exp] 56 / 2e-10 AT1G75240 186 / 2e-56 zinc-finger homeodomain 5, homeobox protein 33 (.1) Potri.004G126500 [exp] 55 / 5e-10 AT3G28920 218 / 5e-69 ZINC FINGER HOMEODOMAIN 9, homeobox protein 34 (.1) Potri.010G169400 [exp] 54 / 8e-10 AT1G69600 152 / 2e-44 ZINC FINGER HOMEODOMAIN 11, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, zinc finger homeodomain 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033016 [exp] 67 / 6e-16 AT3G28917 103 / 4e-30 mini zinc finger 2 (.1) Lus10015370 [exp] 66 / 2e-15 AT3G28917 100 / 5e-29 mini zinc finger 2 (.1) Lus10005242 [exp] 55 / 5e-10 AT5G39760 218 / 9e-69 ZINC FINGER HOMEODOMAIN 10, homeobox protein 23 (.1) Lus10007147 [exp] 52 / 5e-09 AT2G18350 222 / 1e-70 ZINC FINGER HOMEODOMAIN 6, homeobox protein 24 (.1) Lus10038135 [exp] 50 / 2e-08 AT2G02540 223 / 7e-71 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10036753 [exp] 49 / 3e-08 AT5G15210 112 / 3e-30 ZINC FINGER HOMEODOMAIN 8, ZINC FINGER HOMEODOMAIN 3, homeobox protein 30 (.1) Lus10010694 [exp] 49 / 4e-08 AT2G02540 215 / 5e-68 ZINC FINGER HOMEODOMAIN 3, ZINC FINGER HOMEODOMAIN 4, homeobox protein 21 (.1) Lus10015900 [exp] 44 / 3e-06 AT4G24660 145 / 6e-44 ZINC FINGER HOMEODOMAIN 2, MATERNAL EFFECT EMBRYO ARREST 68, homeobox protein 22 (.1) Lus10026010 [exp] 44 / 3e-06 AT1G75240 172 / 2e-52 zinc-finger homeodomain 5, homeobox protein 33 (.1) Lus10014302 [exp] 44 / 5e-06 AT1G75240 176 / 9e-54 zinc-finger homeodomain 5, homeobox protein 33 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04770 [poplar] [flax] ZF-HD_dimer ZF-HD protein dimerisation region
Representative CDS sequence Show only first row Show all	>Potri.017G082701.1 pacid=42814220 polypeptide=Potri.017G082701.1.p locus=Potri.017G082701 ID=Potri.017G082701.1.v4.1 annot-version=v4.1 ATGAGGAAGCGACAAGTGGTGGTAAGAAGATCAGAAGAACCTTCAAGAAGCTCAACGACTTCTTCTTTCACTATCAGGAATGTTAAATACGGAGAGTGCC AAAAGAATCATGCTGCTGGAGTTGGAGGTTACGCTGTTGATGGGTGCAGAGAGTTCATGGCAAGTGGTGAAGAAGGCACAGCTGCTGCACTCACTTGTGC GGCTTGTGGTTGCCATAGGAACTTCCACAGAAGGGAAGTGGAAACAGAGGTGGCATGTGATTGTTCTTCACCTTCTTCAAATGGTAATTAG
AA sequence Show only first row Show all	>Potri.017G082701.1 pacid=42814220 polypeptide=Potri.017G082701.1.p locus=Potri.017G082701 ID=Potri.017G082701.1.v4.1 annot-version=v4.1 MRKRQVVVRRSEEPSRSSTTSSFTIRNVKYGECQKNHAAGVGGYAVDGCREFMASGEEGTAAALTCAACGCHRNFHRREVETEVACDCSSPSSNGN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G28917	ZF_HD	MIF2	mini zinc finger 2 (.1)		Potri.017G082701 [exp]	0	1
AT4G14819			Protein of unknown function (D...		Potri.010G086000 [exp]	2.00	0.7940
AT3G16240		DELTA-TIP1, ATT...	delta tonoplast integral prote...		Potri.001G186700 [exp]	8.36	0.7958	TIP2.4
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Potri.003G126300 [exp]	20.17	0.7254
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Potri.016G027900 [exp]	23.32	0.7288
AT4G10270			Wound-responsive family protei...		Potri.013G147900 [exp]	30.65	0.7600
AT4G20980			Eukaryotic translation initiat...		Potri.011G053500 [exp]	42.73	0.7525
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Potri.015G038700 [exp]	48.00	0.7396	PIN1,PIN1.3
AT1G71090			Auxin efflux carrier family pr...		Potri.008G127700 [exp]	48.41	0.7537
AT2G03500	GARP		Homeodomain-like superfamily p...		Potri.004G144800 [exp]	52.80	0.7219
AT5G49360		ATBXL1, BXL1	beta-xylosidase 1 (.1)		Potri.008G108100 [exp]	60.09	0.7214	Pt-BXL1.1

Compare expression of checked genes

Potri.017G082701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.