Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48600 1737 / 0 ATSMC4, SMC4, ATCAP-C, ATSMC3 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) AT3G54670 133 / 8e-33 ATSMC1, TTN8 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) AT3G47460 84 / 5e-16 ATSMC2 Structural maintenance of chromosomes (SMC) family protein (.1) AT5G62410 84 / 5e-16 TTN3, ATSMC4, ATCAP-E1, SMC2 TITAN 3, structural maintenance of chromosomes 2 (.1) AT2G27170 74 / 8e-13 SMC3, TTN7 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) AT3G28925 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G224900 [exp] 139 / 4e-33 AT3G54670 1540 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Potri.001G125000 [exp] 88 / 3e-17 AT5G62410 1771 / 0.0 TITAN 3, structural maintenance of chromosomes 2 (.1) Potri.009G155200 [exp] 77 / 7e-14 AT2G27170 1665 / 0.0 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) Potri.003G108400 [exp] 71 / 5e-12 AT5G62410 1732 / 0.0 TITAN 3, structural maintenance of chromosomes 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005240 [exp] 1820 / 0 AT5G48600 1804 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Lus10030681 [exp] 1744 / 0 AT5G48600 1723 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Lus10021268 [exp] 112 / 8e-25 AT3G54670 849 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10024895 [exp] 106 / 1e-22 AT3G54670 1604 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10022923 [exp] 105 / 2e-22 AT3G54670 1603 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10013581 [exp] 92 / 1e-21 AT3G54670 167 / 4e-51 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10027215 [exp] 87 / 1e-16 AT3G47460 1795 / 0.0 Structural maintenance of chromosomes (SMC) family protein (.1) Lus10013583 [exp] 82 / 3e-16 AT3G54670 410 / 2e-133 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10017012 [exp] 66 / 2e-11 AT3G26770 139 / 2e-39 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10036169 [exp] 69 / 4e-11 AT2G27170 1368 / 0.0 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF02463 [poplar] [flax] SMC_N RecF/RecN/SMC N terminal domain CL0023 [poplar] [flax] PF06470 [poplar] [flax] SMC_hinge SMC proteins Flexible Hinge Domain
Representative CDS sequence Show only first row Show all	>Potri.017G083200.3 pacid=42813851 polypeptide=Potri.017G083200.3.p locus=Potri.017G083200 ID=Potri.017G083200.3.v4.1 annot-version=v4.1 ATGGGGATGGAATCAGGGGACGATGAATTCATGACAAGCGAGTCCAACTCAGTTCGCACTTCTGCTGGTGGATCTTCGAAAGCCCCGAGGCTGTTCATCA AAGAAATGATCATGAGGAACTTCAAATCTTACGCTGGTGAACAACGCGTTGGTCCTTTCCACAAGAGTTTTTCTGCTGTGGTGGGCCCCAACGGGAGCGG CAAGAGCAATGTGATTGATGCAATGCTATTTGTATTCGGAAAGCGAGCGAAACAGATGAGACTTAATAAGGTTTCAGAGCTTATCCACAATTCAACCAAT CATCAGAATCTGGACAGCGCCGGTGTTTCTGTTCATTTTCAGGAGATTATTGACCTGGATGATGGGACCTATGAGGCTGTTTCAGGAAGTGATTTTGTAA TTACAAGAGTTGCATTTCGGGATAACTCATCCAAGTACTACATCAATGATCGTTCGAGCAATTTTACTGAAGTTACCAAGAAACTGAAGGGAAAAGGAGT TGACCTGGACAATAATCGTTTTCTGATTCTTCAGGGTGAGGTTGAACAGATTTCATTGATGAGGCCAAAAGCTCAAGGACTCCATGATGAAGGTTTTCTT GAATATTTAGAGGACATAATTGGAACTAACAAATATGTTGAAAAAATTGATGAATCATCCAAGGAGTTGGAATCCCTTAACGAGAAAAGATCTGGGGTGG TACAGATGGTTAAGTTGGCGGAGAAGGAAAGAGACAGCTTGGAGGATGTGAAGAATGAAGCAGAGGCCTACATGCTTCAAGAGTTATCATTACTGAAATG GCAAGAGAAAGCCACAAAATTGGCTCATGAAGATACTAGTGCAAGAATGATGGAACTGCACACTAGTGTATCTAGTTTGGAAGAAAATTTAAAGGCTGAA AGAGAGAAGATTCAAGAAAGTCACAAAACAATGAAGGAGCTTGAGATTGTGCATAAAAAGTATATTAAAAGACAAGAGGAACTTGACAATGATCTCAGAA CCTGTAAAGAGGAGTTCAAGGAGTTTGAAAGGCAGGATGTTAAATACCGGGAGGATCTGAAGCACATGAAGCAAAAGATGAAGAAACTTGAAGATAAACT TGAAAAAGATTCGTCAAAGATTGATGACTTAACAAAAGAATGTGAGAACTCGGCAAATTTGATTCCAAAACTTGAAGATAACATCCCCAAACTTCAGAAA CTCTTGCTCGAGGAGGAGAGGATGCTAGAAGAAGTTGTGGAAAATTCTAAAGGTGAAACAGAGAGGTATCGCTCAGAACTCGTGAAGGTTCGTGCTGAAC TAGAACCGTGGGAAAAGCAACTAATTGATCACAAAGGAAAACTTGAAGTTGCATTTACTGAAAGCAAGCTTTTGAATGAAAAGCATGAAGCTGGTCGTGC AGCTTTTGAAAATGCACACAAGCAGATGGATAATATATCTGGAAGCATCGAAATGAAAACTGCAACCATTGCAAAATTACAGAGTAATATAGAAAAGCAC AAACTTGAAGCATCTGAAGCTCGTAAAGTGGAACAGGAATCCATCAAAGAACAAGAAGAGCTTATTCCTCTAGAACAAGCTGCAAGACAGAAGGTTGCTG AACTTAAGTCAATTATTGATTTGGAAAAGAGTCAGGGATCAGTATTGAAAGCAATTTTGCATGCCAAGGAATCTAATGAAATAAGGGGAATACATGGGCG AATGGGAGATTTAGGTGCCATTGATGCAAAATATGATGTTGCCATATCAACAGCTTGTCCTGGACTTGATTATATTGTGGTGGAGACAACTGCTGCAGCA CAAGCATGTGTGGAGCTGCTCCGAAGAGAGAAGCTTGGGGTTGCCACTTTCATGATACTGGAGAAGCAAGTTGACCATTCATCAAAGATGAAGCATAATG TGAGCACTCCAGAGGGTGTTCCTCGTCTTTTTGATCTAGTTAGAGTTCAAGATGAAAGAATGAAACTTGCCTTCTATGCTGCTCTGGGTAATACTGTTGT AGCAAAGGATCTTGATCAGGCAACAAGAATTGCATACGGTGGAAACTTGGAATTTCGACGAGTGGTTACTCTCGATGGTGCACTTTTTGAAAAATCTGGT ACTATGAGTGGTGGGGGAACTAAGCCACGTGGTGGTAAGATGGGGACATCGATTCGGGCTACCAGTGTTTCTGGAGAAGCGGTCACAAGTGCAGAGAAGG AGCTCTCTACCATGGTTGATAGATTAAATGGTATACGCCAACGAATTGCTGATTCTGTGAAACACTACCAAGCCTCGGAAAAAGCAATTGCACACCTGGA GATGGAACTGGCTAAAAGCCAGAAAGAGATTGATAGTCTGAATACAGAACATAGTTATCTGGAGAAACAACTTGGTTCCCTGAAAGCTGCGTCAGAGCCA AAGAAAGATGAGCTTGATAGGCTGGAGGAACTCAAAAGGATAATAGTGACAGAGGAAAAGGAGATTGACAGACTTATTCAGGGGTCTAAAAAGCTGAAGG AAAAGGCTTTGGAGCTTCAGAGTAAAATAGAAAATGCCGGGGGTGAAAGGTTGAAATCACAGAAGGCAAAGGTCAACAGGATTCAGTCTGATATGGATAA AAATAGCACAGAGATCAACCGTCACAAGGTTCAAATAGAGACAGGTCATAAAATGATAAAGAAGTTGACCAAAGGGATTGAGGATTCAAGGAAGGAAAAG GAGCGTCTTACAGAGGAGAGGGAAAAACTGAGAGGTATTTTTAAGGAAATTGAAGAAAAGGCATTTGCAGTTCAAGAGAATTACAAAAAGACACAGGAGC TGATTGATCAACATAAAGAAGTGCTAGATAAAGCCAAATCTGAGTATGAAAAAGTGAAAAAAATTGTGGATGAGTTGCGGGCATCAGAGGTCGATGCTGA TTACAGGTTACAAGATATGAAGAAGAGCTACAAGGAGTTGGAATTGAAGGGGAAGGGTTACAAAAAGAAGCTTGATGACTTGCAAAATGCTCTTCTACAC CATATGGAGCAAACTCAGAAAGAACTAGAGGACCCTGAAAAACTTCAAGCAACCCTTGCTGATAAGACTCTTGCTGAGGCTTGTGACCTCAAAAGGGCCC TTGAAAGGGTAGTGTTGTTGGAAGCACAATTGAAAGATATGAACCCAAACTTAGATTCAATCTCAGAATATCGGAGAAAGGTTTCATCATATAATGAGCG GGTTGAGGAGCTGAACTTGGTAACTCAACAACGTGATGATATAAAAAGGCAGTATGATGAATGGAGAAAGAAAAGGTTGGATGAATTCATGGCAGGGTTC AATACAATATCATTGAAGCTGAAGGAAATGTATCAGATGATTACTCTTGGAGGTGATGCAGAACTTGAGCTAGTGGATTCTTTGGATCCATTTTCTGAAG GTGTTGTTTTCAGTGTCAGACCACCAAAGAAGAGCTGGAAGAATATTGCAAACTTATCTGGTGGTGAAAAGACTCTGAGCTCACTAGCTCTTGTTTTCGC GCTTCATCATTACAAGCCTACTCCACTGTATGTAATGGATGAAATTGATGCCGCTCTGGATTTCAAGAACGTTTCTATTGTGGGACATTATGTGAAGGAC CGAACAAAGGATGCACAGTTCATCATTATAAGCCTAAGGAACAACATGTTTGAGTTGGCGGATCGACTTGTTGGGATTTATAAAACCGATAACTGCACTA AGAGCATTACCATCAATCCAGGGAGCTTTGTTGTGTGCCAAAATGCTGCTTAA
AA sequence Show only first row Show all	>Potri.017G083200.3 pacid=42813851 polypeptide=Potri.017G083200.3.p locus=Potri.017G083200 ID=Potri.017G083200.3.v4.1 annot-version=v4.1 MGMESGDDEFMTSESNSVRTSAGGSSKAPRLFIKEMIMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTN HQNLDSAGVSVHFQEIIDLDDGTYEAVSGSDFVITRVAFRDNSSKYYINDRSSNFTEVTKKLKGKGVDLDNNRFLILQGEVEQISLMRPKAQGLHDEGFL EYLEDIIGTNKYVEKIDESSKELESLNEKRSGVVQMVKLAEKERDSLEDVKNEAEAYMLQELSLLKWQEKATKLAHEDTSARMMELHTSVSSLEENLKAE REKIQESHKTMKELEIVHKKYIKRQEELDNDLRTCKEEFKEFERQDVKYREDLKHMKQKMKKLEDKLEKDSSKIDDLTKECENSANLIPKLEDNIPKLQK LLLEEERMLEEVVENSKGETERYRSELVKVRAELEPWEKQLIDHKGKLEVAFTESKLLNEKHEAGRAAFENAHKQMDNISGSIEMKTATIAKLQSNIEKH KLEASEARKVEQESIKEQEELIPLEQAARQKVAELKSIIDLEKSQGSVLKAILHAKESNEIRGIHGRMGDLGAIDAKYDVAISTACPGLDYIVVETTAAA QACVELLRREKLGVATFMILEKQVDHSSKMKHNVSTPEGVPRLFDLVRVQDERMKLAFYAALGNTVVAKDLDQATRIAYGGNLEFRRVVTLDGALFEKSG TMSGGGTKPRGGKMGTSIRATSVSGEAVTSAEKELSTMVDRLNGIRQRIADSVKHYQASEKAIAHLEMELAKSQKEIDSLNTEHSYLEKQLGSLKAASEP KKDELDRLEELKRIIVTEEKEIDRLIQGSKKLKEKALELQSKIENAGGERLKSQKAKVNRIQSDMDKNSTEINRHKVQIETGHKMIKKLTKGIEDSRKEK ERLTEEREKLRGIFKEIEEKAFAVQENYKKTQELIDQHKEVLDKAKSEYEKVKKIVDELRASEVDADYRLQDMKKSYKELELKGKGYKKKLDDLQNALLH HMEQTQKELEDPEKLQATLADKTLAEACDLKRALERVVLLEAQLKDMNPNLDSISEYRRKVSSYNERVEELNLVTQQRDDIKRQYDEWRKKRLDEFMAGF NTISLKLKEMYQMITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKD RTKDAQFIIISLRNNMFELADRLVGIYKTDNCTKSITINPGSFVVCQNAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48600		ATSMC4, SMC4, A...	ARABIDOPSIS THALIANA STRUCTURA...		Potri.017G083200 [exp]	0	1
AT5G62410		TTN3, ATSMC4, A...	TITAN 3, structural maintenanc...		Potri.003G108400 [exp]	7.93	0.8294	CPE902,Pt-SMC2.2
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Potri.014G070100 [exp]	14.96	0.8111
AT1G27880			DEAD/DEAH box RNA helicase fam...		Potri.010G056500 [exp]	19.36	0.8098
AT5G58320			Kinase interacting (KIP1-like)...		Potri.019G061600 [exp]	21.63	0.7621
AT5G38690			Zinc-finger domain of monoamin...		Potri.018G024400 [exp]	24.33	0.7675
AT5G48390		ATZIP4	Tetratricopeptide repeat (TPR)...		Potri.014G175350 [exp]	25.92	0.7778
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Potri.007G138600 [exp]	26.98	0.7827
AT2G47920			Kinase interacting (KIP1-like)...		Potri.014G135000 [exp]	28.56	0.7560
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Potri.006G063900 [exp]	32.98	0.7148
AT1G10120	bHLH	bHLH074, CIB4	basic helix-loop-helix (bHLH) ...		Potri.002G114700 [exp]	34.91	0.7496

Compare expression of checked genes

Potri.017G083200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.