Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36730 553 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21065 335 / 2e-108 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G02980 328 / 6e-106 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G33760 320 / 7e-103 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 316 / 6e-101 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 313 / 2e-99 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 305 / 1e-94 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 302 / 2e-94 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G56310 293 / 2e-93 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G59720 296 / 5e-93 CRR28 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G034900 [exp] 343 / 7e-113 AT4G21065 370 / 2e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.017G001000 [exp] 345 / 4e-112 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G168800 [exp] 343 / 9e-112 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G231200 [exp] 330 / 2e-106 AT5G66520 504 / 1e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G223900 [exp] 320 / 3e-103 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G369900 [exp] 321 / 9e-103 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G086100 [exp] 312 / 2e-100 AT5G15300 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G043400 [exp] 307 / 9e-98 AT2G33760 775 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G103600 [exp] 307 / 2e-97 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040171 [exp] 516 / 0 AT2G36730 456 / 4e-159 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004373 [exp] 412 / 2e-142 AT2G36730 355 / 1e-120 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013319 [exp] 328 / 6e-106 AT4G21065 744 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10005207 [exp] 320 / 3e-102 AT4G21065 741 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10026006 [exp] 319 / 7e-102 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004544 [exp] 315 / 1e-101 AT4G21065 461 / 2e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10014298 [exp] 318 / 2e-101 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 315 / 2e-99 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025490 [exp] 311 / 7e-99 AT2G33760 734 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 312 / 3e-97 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.017G083900.1 pacid=42813568 polypeptide=Potri.017G083900.1.p locus=Potri.017G083900 ID=Potri.017G083900.1.v4.1 annot-version=v4.1 ATGGTTCGACTTCCAGTCCCAAGAACCGTTAACAGCAATTCAAAACTCCTGTCCAAAAAGAACCATTGCATCTCTCTACTGAAACTCTCATCTTCAGTCA AACATGTCTCTCAAATCCATGCACAGATCCTAGTCTCTGGTCTTCAACAAGACACCAATCTTTTAACTGAACTCATAAGATTCTGTTCCTTATCTCCCTC TAAACACCTCAGTTATGCCCATTCCCTTCTATACAATTCACTTGACTCACTGCCTCCTTGGAATTTCCTCATTAGAGGCTACGCCTCGGGTGATGCACCG AAAAATGCCATACGGGTGTTTCATAGAATGCGAAAAGAAGGAGTTGGACCCAATAACTTTACCTTCCCTTTTGTTTTGAAGGCATGTGCTACTTGCTTGG CACTTGAAGAAGGGAAACAAGTACATGCGGATATTTTTAAGTTTGGTTTAGATTGCGATGTTTATGTTAACAACAATTTGGTTCACTTATATGGGTCTTG TAAGAGGATTTGGGATGCATGTAAAGTGTTTGATGAAATGCCTGTAAGGAGTATCGTTTCGTGGAATTCGGTGATTACTGCTTGTGTTCAGAATTTATGG TTAGGAGATGCAATTTGGAATTTTGTTAAAATGAAGGACTTTGGGTTTGAGCCTAATGAGACGACAATGGTGATTATGCTTTCCCTCTGCGCACAAATAG GGAACTTGAGCTTAGGGAGATGGATTCATTCTCAAGTGATTGAAAGGGGGATGACATTGAATTGTCAATTGGGCACTGCCCTTGTTGACATGTATGCAAA AAGCGGAGATCTTGGTTACGCTAAGCTAGTTTTCGATAGAATGGAGAAGAAGAATGTTTGGACTTGGAGTGCAATGATTTTGGGACTAGCTCAACATGGA TTTGGAAAAGAAGGGCTTGAGCTTTTTCTCAAGATGAAAGAGAGTGTTTCTATTTGCCCAAATTATGTCACATTCCTAGGGGTTCTCTGTGCTTGCAGTC ATGCTGGTTTGGTTGATGAGGGGTTTCGGTACTTTTATGAAATGGAACACAGGCATGGAATTAGACCAATGGTCATACATTATGGTGCCATGGTTGATAT CCTGGGTCGTGCTGGGAATCTTGAAGAGGCTTATAACTTTTTAATGGACGTACCTTTCCAGCCTGACCCAATTTTGTGGAGGACATTGCTCAGTGCATGC AATATTCACAATGCTAATGTCAGTGATGGCTTAGTAGATAAGGTAAGAAAGAAGTTGCTTGAACTAGAGCCCAGGAGGAGTGAGAACTTTGTGATAATTG CAAACATGTATGCTGATGCTGGGATGTGGGAAACGGCAACAAATGTGCGGAGGACTATGAGAGATGGTGGTTTGAAGAAGATAGGTGGCGAGAGTTGCAT TGTTTTAGAGGGCTCAATCCATCAGTTCTTTTCTGGCTGTTCAAAAGATGATCATGAAAGTATCGAACTGCTTCTAGATGGACTGAACTTGAACATGAAA ATGGTAAACTCCCTGTAA
AA sequence Show only first row Show all	>Potri.017G083900.1 pacid=42813568 polypeptide=Potri.017G083900.1.p locus=Potri.017G083900 ID=Potri.017G083900.1.v4.1 annot-version=v4.1 MVRLPVPRTVNSNSKLLSKKNHCISLLKLSSSVKHVSQIHAQILVSGLQQDTNLLTELIRFCSLSPSKHLSYAHSLLYNSLDSLPPWNFLIRGYASGDAP KNAIRVFHRMRKEGVGPNNFTFPFVLKACATCLALEEGKQVHADIFKFGLDCDVYVNNNLVHLYGSCKRIWDACKVFDEMPVRSIVSWNSVITACVQNLW LGDAIWNFVKMKDFGFEPNETTMVIMLSLCAQIGNLSLGRWIHSQVIERGMTLNCQLGTALVDMYAKSGDLGYAKLVFDRMEKKNVWTWSAMILGLAQHG FGKEGLELFLKMKESVSICPNYVTFLGVLCACSHAGLVDEGFRYFYEMEHRHGIRPMVIHYGAMVDILGRAGNLEEAYNFLMDVPFQPDPILWRTLLSAC NIHNANVSDGLVDKVRKKLLELEPRRSENFVIIANMYADAGMWETATNVRRTMRDGGLKKIGGESCIVLEGSIHQFFSGCSKDDHESIELLLDGLNLNMK MVNSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36730			Pentatricopeptide repeat (PPR)...		Potri.017G083900 [exp]	0	1
AT3G26782			Tetratricopeptide repeat (TPR)...		Potri.001G322100 [exp]	1.41	0.9548
AT4G05440		EDA35	embryo sac development arrest ...		Potri.017G048600 [exp]	2.44	0.9257
AT3G52905			Polynucleotidyl transferase, r...		Potri.001G104800 [exp]	3.60	0.9000
AT3G29230			Tetratricopeptide repeat (TPR)...		Potri.004G125500 [exp]	3.87	0.9151
AT3G13160			Tetratricopeptide repeat (TPR)...		Potri.004G030000 [exp]	4.00	0.9098
AT3G11591			unknown protein		Potri.008G011620 [exp]	4.24	0.9087
AT5G07900			Mitochondrial transcription te...		Potri.015G038500 [exp]	5.47	0.9040
AT1G20370			Pseudouridine synthase family ...		Potri.002G014400 [exp]	5.47	0.9102
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.002G220300 [exp]	6.32	0.8878
AT5G59600			Tetratricopeptide repeat (TPR)...		Potri.001G014900 [exp]	6.92	0.9230

Compare expression of checked genes

Potri.017G083900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.