Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15250 959 / 0 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT1G06430 854 / 0 FTSH8 FTSH protease 8 (.1) AT2G30950 843 / 0 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT1G50250 498 / 9e-168 FTSH1 FTSH protease 1 (.1) AT5G42270 493 / 6e-166 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT2G26140 397 / 1e-128 FTSH4 FTSH protease 4 (.1) AT5G53170 397 / 1e-127 FTSH11 FTSH protease 11 (.1) AT2G29080 384 / 8e-123 FTSH3 FTSH protease 3 (.1) AT1G07510 373 / 3e-118 FTSH10 FTSH protease 10 (.1) AT5G58870 368 / 2e-116 FTSH9 FTSH protease 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G215100 [exp] 865 / 0 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.014G139500 [exp] 855 / 0 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.002G012000 [exp] 496 / 2e-167 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.005G249200 [exp] 489 / 2e-164 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.002G220366 [exp] 407 / 7e-139 AT1G06430 405 / 1e-138 FTSH protease 8 (.1) Potri.006G227700 [exp] 397 / 6e-129 AT2G26140 1066 / 0.0 FTSH protease 4 (.1) Potri.015G020700 [exp] 392 / 8e-126 AT5G53170 1096 / 0.0 FTSH protease 11 (.1) Potri.012G000700 [exp] 388 / 2e-124 AT5G53170 1076 / 0.0 FTSH protease 11 (.1) Potri.016G099800 [exp] 373 / 2e-118 AT2G29080 1123 / 0.0 FTSH protease 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001054 [exp] 843 / 0 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001420 [exp] 843 / 0 AT2G30950 1155 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10012277 [exp] 491 / 1e-168 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10021824 [exp] 495 / 1e-166 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10016003 [exp] 489 / 3e-164 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10034572 [exp] 401 / 4e-132 AT5G42270 791 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10014930 [exp] 399 / 8e-129 AT5G53170 1077 / 0.0 FTSH protease 11 (.1) Lus10039334 [exp] 392 / 7e-126 AT5G53170 1087 / 0.0 FTSH protease 11 (.1) Lus10038819 [exp] 390 / 1e-125 AT5G53170 1064 / 0.0 FTSH protease 11 (.1) Lus10001060 [exp] 390 / 7e-125 AT5G53170 1090 / 0.0 FTSH protease 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [poplar] [flax] Peptidase_MA PF01434 [poplar] [flax] Peptidase_M41 Peptidase family M41 CL0023 [poplar] [flax] P-loop_NTPase PF07728 [poplar] [flax] AAA_5 AAA domain (dynein-related subfamily)
Representative CDS sequence Show only first row Show all	>Potri.017G084000.1 pacid=42813671 polypeptide=Potri.017G084000.1.p locus=Potri.017G084000 ID=Potri.017G084000.1.v4.1 annot-version=v4.1 ATGGCACCCGCTCTATCTCTTTCTCTCCCCCACATTCCCATTTGCAAATCTCAGGACCTTGCAAATGATGTCCAGATTCCTAAAAGCACTAACAGAGACA GCCCATCTCTCAAAACACCCCTAGTCCTAGATATCAAACTTAGTAAGAGAGAACTACTTAATGCCACTTCTGTAGTACTCTTAAGTGAAGGACTCTCTGT TGCTAAGCCTGCAAGAGCTGCAGAGCCAGAGAGTCCAGTTACTTCAACTTCAAGTAGAATGTCTTACTCCAGATTCTTTGAGTACTTAGATGAAGGTGCT GTAAGAAAAGTGGACTTGTTTGAGAATGGGACGGTAGCAATAGCTGAGATTTTTAATCCCACACTTGAAAAGATCCAGAGGGTCAAAATCCAGTTACCAG GACTGCCACAAGAGTTGTTGAGGAAACTAGAAGAGAAGAATGTTGATTTTGCTGCTCACCCAACAGAGCCGAACTGGACAGCTGCTCTACTTGACTCGTT GGGAAACTTGGCCTTTCCATTGATATTGCTCGGCTCTTTGTTGTTAAGGACATCATCTACCAACACCCCCGGAGGTCCCGGCTTGCCATTTGGACTAGGA AGGAGCAAAGCCAAATTCCAGATCGAGCCTAATACTGGAGTGACATTTGATGATGTTGCTGGAGTTGACGAAGCAAAGCAAGATTTTCAAGAAATTGTGG AATTTTTAAAAACTCCAGAGAAGTTTGCTGCAGTAGGTGCAAGGATTCCTAAGGGAGTTCTGTTAGTAGGACCTCCAGGAACTGGAAAAACCTTGCTAGC TAAAGCAATAGCTGGAGAAGCAGGCGTTCCTTTCTTTTCTCTGTCAGGATCAGAGTTTATTGAGATGTTTGTTGGTGTAGGGGCTTCAAGAGTTAGGGAC TTGTTCAACAAGGCTAAGGCGAACTCACCATGCATAGTTTTTATCGATGAGATAGATGCTGTCGGGAGGCAGAGAGGGACAGGAATTGGTGGAGGAAATG ATGAGAGGGAGCAGACACTGAATCAATTACTTACTGAAATGGATGGTTTTAGTGGTAATAGTGGAGTGATTGTTATTGCTGCTACAAACCGACCTGAAAT TCTTGATTCTGCTTTGCTTAGGCCAGGAAGATTTGATAGGCAGGTCACAGTTGGGCTACCAGATGTGAGAGGAAGGGAGGAGATATTAAACGTGCATAGC AAAAACAAGAAGCTGGACAAAGGGGTCTCTCTGAGCGTTATTGCCATGAGGACGCCAGGATTCAGTGGTGCAGACTTGGCTAACCTAATGAATGAAGCGG CAATTCTTGCTGGTAGGAGAGGCAAATACAAGATCACCCTGAAAGAGATTGATGATTCAATCGATCGAATCGTGGCAGGCATGGAGGGAACCAAGATGAC TGATGGAAAGTGCAAAACTTTGGTGGCTTACCATGAAGTTGGGCACGCTGTTTGCGCGACATTGACACCCGGACATGACCTGGTGCAGAAAGTCACTCTA ATTCCCCGGGGGCAAGCTCGTGGTCTAACGTGGTTCATACCAGGTGAGGATCCGACTCTCATTTCCAAGCAACAGCTATTTTCTAGGATAGTTGGAGGAC TTGGAGGAAGAGCAGCAGAGGAAGTGATTTTTGGTGAATCAGAAATCACAACTGGTGCAGCAGGGGACCTGCAACAGATCACTCAAATTGCTAAACAGAT GGTAACAATGTTTGGCATGTCTGAGCTCGGACCATGGGCACTGACCGATCCAGCAGCACAGAGCAGTGATGTGGTGCTAAGGATGCTAGCTAGAAACTCC ATGTCAGAGAAACTCGCAGAAGATATCGATTCATCAGTGCGAAACATAATTGAAAGAGCATATGAGATTGCTAAGGAACATATAAGGAACAATAGGGAGG CCATTGATAAACTAGTGGAGGTGCTGCTAGAAAAGGAAACCCTCTCTGGGGATGAGTTCAGGGCAATCTTGTCTGAATTCACAGATATTCATGTTGATAA AATAGATAGAACCCCTGTAAGAGAATTGATTAATGCCTAG
AA sequence Show only first row Show all	>Potri.017G084000.1 pacid=42813671 polypeptide=Potri.017G084000.1.p locus=Potri.017G084000 ID=Potri.017G084000.1.v4.1 annot-version=v4.1 MAPALSLSLPHIPICKSQDLANDVQIPKSTNRDSPSLKTPLVLDIKLSKRELLNATSVVLLSEGLSVAKPARAAEPESPVTSTSSRMSYSRFFEYLDEGA VRKVDLFENGTVAIAEIFNPTLEKIQRVKIQLPGLPQELLRKLEEKNVDFAAHPTEPNWTAALLDSLGNLAFPLILLGSLLLRTSSTNTPGGPGLPFGLG RSKAKFQIEPNTGVTFDDVAGVDEAKQDFQEIVEFLKTPEKFAAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSLSGSEFIEMFVGVGASRVRD LFNKAKANSPCIVFIDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFSGNSGVIVIAATNRPEILDSALLRPGRFDRQVTVGLPDVRGREEILNVHS KNKKLDKGVSLSVIAMRTPGFSGADLANLMNEAAILAGRRGKYKITLKEIDDSIDRIVAGMEGTKMTDGKCKTLVAYHEVGHAVCATLTPGHDLVQKVTL IPRGQARGLTWFIPGEDPTLISKQQLFSRIVGGLGGRAAEEVIFGESEITTGAAGDLQQITQIAKQMVTMFGMSELGPWALTDPAAQSSDVVLRMLARNS MSEKLAEDIDSSVRNIIERAYEIAKEHIRNNREAIDKLVEVLLEKETLSGDEFRAILSEFTDIHVDKIDRTPVRELINA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15250		FTSH6, ATFTSH6	FTSH protease 6 (.1.2)		Potri.017G084000 [exp]	0	1
AT5G12020		HSP17.6II	17.6 kDa class II heat shock p...		Potri.006G223900 [exp]	2.00	0.9867	HSP17.11
					Potri.004G095550 [exp]	2.82	0.9834
AT5G59720		HSP18.2 HSP18.1...	heat shock protein 18.2 (.1)		Potri.010G195700 [exp]	4.69	0.9852	Pt-HSP18.4
AT4G18490			unknown protein		Potri.011G063500 [exp]	5.29	0.9714
AT2G29500			HSP20-like chaperones superfam...		Potri.009G148000 [exp]	5.74	0.9849
AT1G53420			Leucine-rich repeat transmembr...		Potri.006G014066 [exp]	7.61	0.9566
AT2G29500			HSP20-like chaperones superfam...		Potri.009G049900 [exp]	7.74	0.9831
AT2G46240		ATBAG6, BAG6	ARABIDOPSIS THALIANA BCL-2-ASS...		Potri.002G166300 [exp]	9.79	0.9797
AT5G11680			unknown protein		Potri.003G158200 [exp]	11.40	0.9736
AT1G16740			Ribosomal protein L20 (.1)		Potri.004G095475 [exp]	12.36	0.9650

Compare expression of checked genes

Potri.017G084000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.