Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01180 986 / 0 ATSS2 starch synthase 2 (.1) AT5G24300 489 / 2e-164 SSI1, SSI, ATSS1 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) AT1G32900 335 / 2e-105 GBSS1 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) AT4G18240 223 / 3e-61 ATSS4, SSIV ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) AT1G11720 213 / 9e-58 ATSS3 starch synthase 3 (.1.2) AT5G01220 45 / 0.0002 SQD2 sulfoquinovosyldiacylglycerol 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G012400 [exp] 485 / 1e-162 AT5G24300 904 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Potri.011G152200 [exp] 358 / 1e-113 AT1G32900 880 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.001G449500 [exp] 343 / 5e-108 AT1G32900 922 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.001G351800 [exp] 237 / 7e-66 AT4G18240 1293 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Potri.004G014100 [exp] 204 / 2e-54 AT1G11720 1460 / 0.0 starch synthase 3 (.1.2) Potri.018G149500 [exp] 193 / 9e-53 AT4G18240 449 / 4e-146 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Potri.007G009600 [exp] 72 / 9e-13 AT5G65685 507 / 2e-174 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.016G112600 [exp] 52 / 1e-06 AT5G01220 727 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1) Potri.006G097600 [exp] 50 / 7e-06 AT5G01220 750 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033014 [exp] 1033 / 0 AT3G01180 973 / 0.0 starch synthase 2 (.1) Lus10015371 [exp] 990 / 0 AT3G01180 928 / 0.0 starch synthase 2 (.1) Lus10018116 [exp] 488 / 2e-163 AT5G24300 855 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Lus10022398 [exp] 487 / 2e-163 AT5G24300 874 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Lus10008279 [exp] 360 / 7e-115 AT1G32900 883 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10033245 [exp] 354 / 2e-112 AT1G32900 885 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10028133 [exp] 221 / 3e-60 AT4G18240 1285 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10023319 [exp] 219 / 9e-60 AT4G18240 1303 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10038491 [exp] 219 / 1e-59 AT4G18240 1278 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10042837 [exp] 216 / 1e-58 AT4G18240 1281 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00534 [poplar] [flax] Glycos_transf_1 Glycosyl transferases group 1 CL0113 [poplar] [flax] GT-B PF08323 [poplar] [flax] Glyco_transf_5 Starch synthase catalytic domain
Representative CDS sequence Show only first row Show all	>Potri.017G084100.1 pacid=42813186 polypeptide=Potri.017G084100.1.p locus=Potri.017G084100 ID=Potri.017G084100.1.v4.1 annot-version=v4.1 ATGTCTTCTATAGGATCACTGCCTTTTATTATTGAAACAACCAAAGCAGAAAGTCCTGTTCTTCTCTCTCGCAAAAACAAAAATCGAGACAAGTTTTCTT TTTTCACGTGCAGAACAAAGAAGTCTCATAATTTAGCTGTTTTGAATTATGGGTTTTCTCCGAAATCTAAGCCTGTGAGAGCTACAGTTGAGGAAGGTGC GAGTGGTGATGAATCAGAAGATGCACTGCAAGCCAGCATTGAAAAGAGCAAGAAGGTTCTTGCTATGCAAAGAGACCTACTTCAGCAGATTGCTGAGAGA AGAAAAATAGTTTCTTCTATAAAAAGTAGTATCATTGACTCAGAAGTAGATGAAGTTCCTTCTGAGCAGAGTGAGGAGTCTTCTCCAAATCAGGACCATA CTTCAAGTAGTGGTCAGGGTGTTCATGAAAAACAGAATGGCAGCATTCTTTGGAAAAACTACATCCACTCAACTGCAGATGAGGTACCAGAAACTTCAAC TTTAGATATTAGTAAAGGTTATGATGACGATAAAAGGGAACTTGAGCAGCAACTACCTCCTAAAAAGGCTTCTTCTCATGAGGATTCTTCCAAACAGTTG AGAGTCACTGGTTCAGAGAAAGTTTGGTCAGACAAGCTGCCTTCTTTTCTTTCAAATACCTCAGAAATATCAACTACTAATGAAAAACAAGAAAATGTCA ATGAACCTATATTGCCAGAGATTAATAACATCGAAAATGATCCTGCAACTGAAGACATTTTACCCCCTCCATTGGCTGGTGCCAATGTCATGAATGTTAT TATGGTGGCTGCAGAATGTGCTCCATGGTCTAAAACAGGTGGGCTTGGAGATGTTGCTGGGTCTTTACCAAAGGCTTTGGCTCGGCGTGGACACAGGGTT ATGGTTGTGGCTCCTCGGTATGGCAACTATGCGGAACCTCACGATATTGGAGTTCGAAAAAGATATAAGGTGGATGGTCAGGACATAGAAGTAACATTCT TCCAAACCTACATTGATGGTGTGGATTTTGTTTTCATTGATTCTCATGTATTTTGCCATATAGAGGGTAATATATATGGAGGAAGCCGATTGGACATTTT AAAGCGCATGGCGTTATTTTGCAAAGCAGCTGTTGAGGTTCCTTGGCATGTTCCATGTGGAGGTATCTGCTATGGAGATGGAAATTTAGTTTTCATTGCA AATGATTGGCATACTGCTTTGTTGCCAGTGTATCTGAAGGCATATTATCGGGACAATGGTTTAATGAAATTTACAAGATCCATACTTGTAATTCATAATA TAGCACACCAGGGTCGTGGACCAGTGGATGATTTCTTCCATGTGGATCTGCCAGAGCACTACATTGACCTTTTCAAATTGCATGATCCTGTTGGTGGTGA ACACTTCAATATCTTTGCAGCTGGTCTGAAGGCAGCGGACCGTGTGGTTACTGTCAGTCATGGATATTCCTGGGAGCTTAAAACTTCTGAAGGTGGTTGG GGTCTGCACAACATCATAAAGGAAAATGATTGGAAATTTAGTGGCATTGTGAATGGCATTGATACAAAAGAATGGAACCCACTGTTTGATGTTCACCTGA CCTCAGATGGTTACACCAACTACTCCCTGGAAACACTGCACACTGGCAAGCCTCAATGCAAGGCAGCCTTACAGAAGGAGCTTGGTTTGCCTGTTCGTCC GGATGTCCCTATGATTGGTTTCATTGGAAGGCTGGATCAACAGAAAGGAGTTGATCTCATAGCTGAGGCAGTTCCGTGGATGTTGGGCCAGGACGTGCAA CTAGTCATGTTGGGCACTGGCAGACAAGACCTGGAACAGATGCTTAGGCAGTTTGAAAATCAACACCATGACAAAATCAGGGGATGGGTTGGTTTTTCTG TAAAGATGGCTCACAGGATAACTGCTGGTTCAGATGTTTTGCTCATGCCATCACGATTTGAGCCTTGTGGGCTGAACCAACTATATGCTATGATGTACGG AACAATTCCAGTCGTCCATGCTGTTGGGGGACTAAGGGATACCGTGCAACCTTTTGATCCGTTCAATGAATCCGGGCTTGGGTGGACATTTGATGGTGCT GAAGCAAATAAACTGATACATGCACTAGGGAACTGCTTATTTACTTACCGAGAGTACAAGAAAAGTTGGGAGGGACTCCAAAGACGAGGGATGACTCAAG ATCTCAGCTGGGATCATGCAGCTGAGAAATACGAGGAAGTACTCGTTGCTGCCAAGTACCAGTGGTGA
AA sequence Show only first row Show all	>Potri.017G084100.1 pacid=42813186 polypeptide=Potri.017G084100.1.p locus=Potri.017G084100 ID=Potri.017G084100.1.v4.1 annot-version=v4.1 MSSIGSLPFIIETTKAESPVLLSRKNKNRDKFSFFTCRTKKSHNLAVLNYGFSPKSKPVRATVEEGASGDESEDALQASIEKSKKVLAMQRDLLQQIAER RKIVSSIKSSIIDSEVDEVPSEQSEESSPNQDHTSSSGQGVHEKQNGSILWKNYIHSTADEVPETSTLDISKGYDDDKRELEQQLPPKKASSHEDSSKQL RVTGSEKVWSDKLPSFLSNTSEISTTNEKQENVNEPILPEINNIENDPATEDILPPPLAGANVMNVIMVAAECAPWSKTGGLGDVAGSLPKALARRGHRV MVVAPRYGNYAEPHDIGVRKRYKVDGQDIEVTFFQTYIDGVDFVFIDSHVFCHIEGNIYGGSRLDILKRMALFCKAAVEVPWHVPCGGICYGDGNLVFIA NDWHTALLPVYLKAYYRDNGLMKFTRSILVIHNIAHQGRGPVDDFFHVDLPEHYIDLFKLHDPVGGEHFNIFAAGLKAADRVVTVSHGYSWELKTSEGGW GLHNIIKENDWKFSGIVNGIDTKEWNPLFDVHLTSDGYTNYSLETLHTGKPQCKAALQKELGLPVRPDVPMIGFIGRLDQQKGVDLIAEAVPWMLGQDVQ LVMLGTGRQDLEQMLRQFENQHHDKIRGWVGFSVKMAHRITAGSDVLLMPSRFEPCGLNQLYAMMYGTIPVVHAVGGLRDTVQPFDPFNESGLGWTFDGA EANKLIHALGNCLFTYREYKKSWEGLQRRGMTQDLSWDHAAEKYEEVLVAAKYQW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01180		ATSS2	starch synthase 2 (.1)		Potri.017G084100 [exp]	0	1
AT5G41761			unknown protein		Potri.014G095100 [exp]	32.86	0.8985
AT1G55230			Family of unknown function (DU...		Potri.001G009000 [exp]	53.78	0.8946
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Potri.012G144500 [exp]	65.52	0.8911
AT4G38840			SAUR-like auxin-responsive pro...		Potri.009G126900 [exp]	78.70	0.8891
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.003G019900 [exp]	98.64	0.8864
AT2G14900			Gibberellin-regulated family p...		Potri.001G297700 [exp]	108.34	0.8829
AT5G16970		AT-AER	alkenal reductase (.1)		Potri.007G143600 [exp]	113.06	0.8274
AT5G01870			Bifunctional inhibitor/lipid-t...		Potri.016G135800 [exp]	118.95	0.8805
AT3G15270	SBP	SPL5	squamosa promoter binding prot...		Potri.011G116800 [exp]	122.53	0.8760
AT5G18080		SAUR24	small auxin up RNA 24, SAUR-li...		Potri.009G127100 [exp]	122.90	0.8790

Compare expression of checked genes

Potri.017G084100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.