Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01175 140 / 1e-36 Protein of unknown function (DUF1666) (.1) AT5G39785 142 / 6e-36 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) AT3G20260 138 / 1e-35 Protein of unknown function (DUF1666) (.1) AT1G69610 127 / 5e-31 Protein of unknown function (DUF1666) (.1) AT1G73850 90 / 1e-18 Protein of unknown function (DUF1666) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G126800 [exp] 149 / 6e-38 AT5G39785 462 / 2e-154 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Potri.017G082300 [exp] 149 / 7e-38 AT5G39785 462 / 1e-153 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Potri.008G004400 [exp] 127 / 8e-32 AT3G20260 426 / 3e-147 Protein of unknown function (DUF1666) (.1) Potri.015G046900 [exp] 94 / 7e-20 AT1G73850 416 / 2e-138 Protein of unknown function (DUF1666) (.1) Potri.012G056400 [exp] 91 / 5e-19 AT1G73850 397 / 5e-131 Protein of unknown function (DUF1666) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015368 [exp] 159 / 2e-41 AT5G39785 445 / 3e-148 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Lus10037176 [exp] 140 / 5e-35 AT5G39785 334 / 4e-106 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Lus10036751 [exp] 138 / 1e-34 AT5G39785 328 / 7e-104 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Lus10007264 [exp] 129 / 3e-31 AT5G39785 411 / 2e-135 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Lus10034809 [exp] 114 / 6e-27 AT3G20260 487 / 3e-171 Protein of unknown function (DUF1666) (.1) Lus10033354 [exp] 108 / 4e-25 AT3G20260 462 / 5e-162 Protein of unknown function (DUF1666) (.1) Lus10038936 [exp] 87 / 1e-17 AT1G73850 457 / 4e-155 Protein of unknown function (DUF1666) (.1) Lus10027226 [exp] 84 / 8e-17 AT1G73850 455 / 5e-153 Protein of unknown function (DUF1666) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07891 [poplar] [flax] DUF1666 Protein of unknown function (DUF1666)
Representative CDS sequence Show only first row Show all	>Potri.017G084200.1 pacid=42814280 polypeptide=Potri.017G084200.1.p locus=Potri.017G084200 ID=Potri.017G084200.1.v4.1 annot-version=v4.1 ATGGCTCTCCTTGCGTCCTGCTGGTTAATCGTTGAATCTTTTGTCATCGCTGATGGATTTTTGAAGTGGTTTTATTTGAGTTTCTACATCCATCCCATTT TTCTTTTTGTTTGCCAGATATTCCTTTGGCTCAAGTTGCTTCAAAAATGTTTTCTAGTAGCCATCTTTTATCTTTCCCATGTTGGTCTGTGTGTTTACAT CTTCTTCAAAGATTGTGTCGTCTATATATTTTCATTCGGTAGATGCAGCAATATTGAAGATGTAGAAGAGATTGAGAGTTTTGGACCTCTAAAAAGTTTC AAAAATCAAGTTGTCATTTCTTATAGTTGTTCAAGTATTGCACCGTTGCCATGCCAGCTACAGGTATTCAAGCTCAATAAAAATTGGTCTACAGAGGAGA AAGATTCTGGGGGTGATGCAATTCCATGCAAGGATGAAAATATGGAACAGCAGGCTCTTTTCGTTGGTGAAGATGAAAGCATGATCAATGGTCATTTGTC TTCAATTTCTTTTAGTTCCAGATTTTCCACTACAGCTGAAAGTTTAAACAAGGATGATGACCTATCATCCGTTAGCAGCTCCAATTCACCTGCTGCCGGA GATCTAGACATGACGCAATATTCATCATTGGTTGATAGCTCCAATTCACTGGCTGTGGAAAGGGAATTTACAGCCAACTGGAGCAGAGAGGAAGATCATC AAGATCCATTCTACAAGAAATACACCGAAAGAATGAGGTGGTTCGATGTGCTCAACGACGAACGCACAAGTGGAATAAGTGCAATTCTGAATAGGCAAGT TGGAAATATTCCAAGTTCATTTGAGCGTATGAAGCTGCCTGCTGATATGTCGGTGCCGTTTGTACCATGGAGCAAAATGGAGAAAAGGAAGCTCTTGAAA AGCTTAGAGAGTGATTTTGAGCTGGTATATGTGGCTCAATCATGCTTGTCATGGGAGGCCCTTCACCACCAGTATAGAAAGGTTGAAGCTCTTGCATCCT CTAGCTCTCAAAACGGGGTGTTTTACGATGATGTGCCAGGCGAATTTCAGAAATTTCAAGTATTGTTGGAGAGATTTATGGAAGATGAAAGGTGTGAATT AGGCAAGAGGGATTGGAATTATGTTAGAGGAAGATTTTCTCTCAAGAGCCTTCTCCAAGTTCCCATGGTTTCAGGCTTCCATGAGCAAGAAAATGAAGAA ATAAAACGTGAAGCCATAAATGTCAAAGAGGTAATGGAAGCCATAGAGAGGGGCATATTAGCATATTGGGTATTTATTAAAACAGATGGTAGAAAACCTT GGTGGAAGTTGAGAAGTTCATTATGGACATGGCCAACTGTGGAGGACCCTAGAGATGTGGGGCTACAAGCTGATCTCACTAGAAAGCTCCAAAAGAAGGA ACTGTGGTTGAAAGAGTCGCAAGGGAAGCTCAAGTGTTGGTTCAGGAGAGCAGTAAACCCTACCCTAGAAGAGTCACAAAAGAAGGAGATGTTATTCGCA ATGATAGACTTGAAGCTGATATCAAGGGTGCTCCAAATGTCTGTGCTCTCCACTTCCCAACTCAAATGGTGCCAAGAAAAACTAGAGAAAATAGAGTTCA AGGAAGGCAAGATTGCGAGAGCTTGCACTAGCGGTCCCTTGTTTCCTCCTTGA
AA sequence Show only first row Show all	>Potri.017G084200.1 pacid=42814280 polypeptide=Potri.017G084200.1.p locus=Potri.017G084200 ID=Potri.017G084200.1.v4.1 annot-version=v4.1 MALLASCWLIVESFVIADGFLKWFYLSFYIHPIFLFVCQIFLWLKLLQKCFLVAIFYLSHVGLCVYIFFKDCVVYIFSFGRCSNIEDVEEIESFGPLKSF KNQVVISYSCSSIAPLPCQLQVFKLNKNWSTEEKDSGGDAIPCKDENMEQQALFVGEDESMINGHLSSISFSSRFSTTAESLNKDDDLSSVSSSNSPAAG DLDMTQYSSLVDSSNSLAVEREFTANWSREEDHQDPFYKKYTERMRWFDVLNDERTSGISAILNRQVGNIPSSFERMKLPADMSVPFVPWSKMEKRKLLK SLESDFELVYVAQSCLSWEALHHQYRKVEALASSSSQNGVFYDDVPGEFQKFQVLLERFMEDERCELGKRDWNYVRGRFSLKSLLQVPMVSGFHEQENEE IKREAINVKEVMEAIERGILAYWVFIKTDGRKPWWKLRSSLWTWPTVEDPRDVGLQADLTRKLQKKELWLKESQGKLKCWFRRAVNPTLEESQKKEMLFA MIDLKLISRVLQMSVLSTSQLKWCQEKLEKIEFKEGKIARACTSGPLFPP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01175			Protein of unknown function (D...		Potri.017G084200 [exp]	0	1
AT3G16340		ABCG29, ATPDR1,...	ATP-binding cassette G29, plei...		Potri.003G049600 [exp]	7.34	0.6420
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Potri.008G008700 [exp]	10.24	0.6434
AT4G27190			NB-ARC domain-containing disea...		Potri.001G446650 [exp]	17.77	0.6365
AT1G31930		XLG3	extra-large GTP-binding protei...		Potri.019G130200 [exp]	24.79	0.6266
AT3G51820		PDE325, ATG4, G...	PIGMENT DEFECTIVE 325, UbiA pr...		Potri.016G119400 [exp]	28.24	0.6196
AT4G34660			SH3 domain-containing protein ...		Potri.001G128800 [exp]	34.20	0.5941
AT3G29060			EXS (ERD1/XPR1/SYG1) family pr...		Potri.017G086800 [exp]	37.09	0.5919
AT5G53460		GLT1	NADH-dependent glutamate synth...		Potri.012G011700 [exp]	41.89	0.5673	Pt-GLT1.3
AT2G30230			unknown protein		Potri.019G123900 [exp]	43.35	0.6124
AT4G23740			Leucine-rich repeat protein ki...		Potri.012G033200 [exp]	45.51	0.5934

Compare expression of checked genes

Potri.017G084200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.