Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39680 782 / 0 EMB2744 EMBRYO DEFECTIVE 2744, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 488 / 2e-161 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 484 / 5e-161 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G11290 481 / 8e-160 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G30700 476 / 5e-158 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 483 / 1e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G68930 474 / 1e-157 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G29760 456 / 9e-151 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G16480 456 / 1e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G12770 449 / 1e-148 MEF22 mitochondrial editing factor 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G018700 [exp] 523 / 3e-175 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 514 / 6e-171 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 506 / 2e-169 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 495 / 7e-166 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.002G155100 [exp] 496 / 1e-165 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 493 / 2e-161 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G085500 [exp] 483 / 1e-160 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.013G044700 [exp] 483 / 1e-160 AT3G22690 582 / 0.0 unknown protein Potri.003G164900 [exp] 476 / 1e-157 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001483 [exp] 843 / 0 AT5G39680 691 / 0.0 EMBRYO DEFECTIVE 2744, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 511 / 4e-171 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035164 [exp] 493 / 4e-164 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031994 [exp] 489 / 2e-162 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030908 [exp] 501 / 3e-162 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10016425 [exp] 485 / 2e-161 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10038741 [exp] 481 / 2e-161 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030581 [exp] 496 / 3e-160 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10018978 [exp] 488 / 2e-159 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 481 / 1e-157 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.017G084900.4 pacid=42814511 polypeptide=Potri.017G084900.4.p locus=Potri.017G084900 ID=Potri.017G084900.4.v4.1 annot-version=v4.1 ATGCTAAAGGCACAAAGAAAGGCTTATGTGCCATTCCGGCACGCGCCATTTCTACTCAGACCAAATGCTGTCTCGCCCTCCTCTCCTCTAGACCTCATTA AGCTCTTAAAACTGTCAGCTGATACTAAAAACCTCAAGGTTGGTAAAACAATCCATTCCCATTTGATCGTAACTTCCCGAGCCACAGAAAACAGCATAAT TGAAGTTAATTCCTTGATAAATTTCTATGCAAAAGTTAATCAGGTCTCCATTGCCCACAACTTGTTTGATAGAATGCCTGAAAGAAATGTGGTTTCTTGG AGTGCTTTGATGACTGGGTATTTACTCAATGGGTTTTCTTTGAAAGTGATTAGGTTGTTGAAAGATATGATTTCGGAGGGTAATGTTAGCCCGAATGAGT ATATATTAGCAATTGCGATTTCTTCTTGTTGTGATCGTGGGAGAGTTGAGGAGGGTAGGCAATGTCACGGGCTTTTGTTAAAGACTGGGTTCTCGTTTCA TAATTATGTGAGGAATGCTCTTGTATCTATGTATTCTAAATGTTCGATTGTTCAAGATGCAATGGGGGTTTGGAATGAAGTGCCTGTAAATGATATTGTT GCTTATAATTCGATTTTGAGTAGCCTTGTGGAAAATGGGTATTTGAGGGAGGGTTTGGAGGTCCTGAGGAGTATGGTCAGCGAGTCTGTGAAGTGGGATA AGGTTACTTTTGTTAATGCTTTTAGTCTTTGTGCTTCTCTTAAAGATTTGAGATTGGGTTTGCATGTTCATGGCAAGATGTTGACGAGTGATGTTGAATG TGATGCATATGTTAGCAGTGCAATCATAAATATGTACGGGAAATGTGGAAAGAGTTTGATGGCAAGGGGGGTCTTTGATGGTTTGCAAAGTCGGAATGTT GTGTTATGGACAGCGGTCATGGCTTCTTGCTTTCAAAATGGTTGCTTTGAAGAAGCACTGAATTTATTTTCAAAAATGGAGCAGGAAAATGTAAAATCAA ATGAATTTACATATGCTGTCTTGTTAAATGCTTGTGCGGGCCTGTCTGCACGAAGAAATGGGTCTTTGTTACATGGACACAGTGAGAAGTCGGGCTTTAA GCACCATGTTATGGTTGGAAATGCTTTAATAAATATGTATGCAAAGAGTGGCGACATTGAGGCAGCTAAGAAAGTATTTTCAGATATGATGCATCGTGAC ATCATTACTTGGAATGCAATGATATGTGGCTTCTCACACCATGGGCTTGGAAAGAAAGCTCTTCTTGTGTTTCAAGACATGTTGGCTGCAGAAGAGCATC CTAACTATGTAACTTTTACTGGGGTTCTCTCTGCTTGTGGCCATCTGGGTCTAGTGCAAGAGGGATTCTATTATCTGCACCACCTAATGAAACAGTTTGG TGTCCAACCTGGATTGGAACACTATACTTGTATTGTTAGCCTTCTGAGCAAGACAGGACAACTTAATGAAGCCCGGAATTTTATGAGGACAGCACCAGTT AAATGGGATGTTGTTGCCTGGCGTACTTTGCTCAATGCATGCCATGTCCATCAGAACTACGGCTTAGGAAGGTGGGTTGCAGAATTTGTCTTGGAGATGG ACCCTAATGATGTAGGGACTTACACACTGTTATCTAATATCTATGCCAAGGAAAAGAGATGGGATGGAGTTGTCAAGGTTAGAAAGTTGATGAGGGACAA AAAGATTAAGAAAGAACCTGGGGTGAGCTGGATAGAGATTGGAAATGTCACCCATATATTTACTTCGGAAGACAATAAGCATCCAGATTATGGTCAGACT TATCAAAAAGTAAAGGAACTCTTAGCTATGATTAAGCCACTGGGTTATACTCCAGATATTGGTGCAGTACTGCATGATGTAGAGGATGAACAGAAGGAAT ATTATCTTAGTTATCACAGTGAGAAGCTGGCCATAGCTTATGGACTTCTGAAGTTGCCATCAGAAGCATCCATCCTTGTAATTAAGAACCTTAGGATATG TGATGATTGCCATTCAGCTGTGAGACTTATTTCAAAGGTTACAAACAGAGTGATAGTTGTTAGAGATGCCAACCGTTTCCATCACTTTCGAGATGGGAGG TGTTCTTGCTTAGATTATTGGTGA
AA sequence Show only first row Show all	>Potri.017G084900.4 pacid=42814511 polypeptide=Potri.017G084900.4.p locus=Potri.017G084900 ID=Potri.017G084900.4.v4.1 annot-version=v4.1 MLKAQRKAYVPFRHAPFLLRPNAVSPSSPLDLIKLLKLSADTKNLKVGKTIHSHLIVTSRATENSIIEVNSLINFYAKVNQVSIAHNLFDRMPERNVVSW SALMTGYLLNGFSLKVIRLLKDMISEGNVSPNEYILAIAISSCCDRGRVEEGRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVNDIV AYNSILSSLVENGYLREGLEVLRSMVSESVKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVECDAYVSSAIINMYGKCGKSLMARGVFDGLQSRNV VLWTAVMASCFQNGCFEEALNLFSKMEQENVKSNEFTYAVLLNACAGLSARRNGSLLHGHSEKSGFKHHVMVGNALINMYAKSGDIEAAKKVFSDMMHRD IITWNAMICGFSHHGLGKKALLVFQDMLAAEEHPNYVTFTGVLSACGHLGLVQEGFYYLHHLMKQFGVQPGLEHYTCIVSLLSKTGQLNEARNFMRTAPV KWDVVAWRTLLNACHVHQNYGLGRWVAEFVLEMDPNDVGTYTLLSNIYAKEKRWDGVVKVRKLMRDKKIKKEPGVSWIEIGNVTHIFTSEDNKHPDYGQT YQKVKELLAMIKPLGYTPDIGAVLHDVEDEQKEYYLSYHSEKLAIAYGLLKLPSEASILVIKNLRICDDCHSAVRLISKVTNRVIVVRDANRFHHFRDGR CSCLDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39680		EMB2744	EMBRYO DEFECTIVE 2744, Pentatr...		Potri.017G084900 [exp]	0	1
AT1G68930			pentatricopeptide (PPR) repeat...		Potri.010G136200 [exp]	1.73	0.9393
AT4G15570		MAA3	MAGATAMA 3, P-loop containing ...		Potri.017G056700 [exp]	2.82	0.9017
AT5G52630		MEF1	mitochondrial RNAediting facto...		Potri.016G053500 [exp]	4.24	0.8989
AT3G26540			Tetratricopeptide repeat (TPR)...		Potri.002G075300 [exp]	5.47	0.8907
AT3G23330			Tetratricopeptide repeat (TPR)...		Potri.001G186500 [exp]	6.00	0.8923
AT4G20020			unknown protein		Potri.004G218800 [exp]	7.41	0.8895
AT5G61800			Pentatricopeptide repeat (PPR)...		Potri.012G110800 [exp]	7.48	0.8959
AT1G27700			Syntaxin/t-SNARE family protei...		Potri.004G090200 [exp]	9.79	0.8880
AT4G20020			unknown protein		Potri.004G218650 [exp]	10.00	0.8679
AT1G25360			Pentatricopeptide repeat (PPR)...		Potri.002G027800 [exp]	10.24	0.8813

Compare expression of checked genes

Potri.017G084900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.