Plant FIBer expression Database

Potri.017G085100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G29010 393 / 1e-139 Biotin/lipoate A/B protein ligase family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003218
[exp]
387 / 3e-137 AT3G29010 364 / 6e-128 Biotin/lipoate A/B protein ligase family (.1)
Lus10017321
[exp]
387 / 8e-135 AT3G29010 362 / 4e-125 Biotin/lipoate A/B protein ligase family (.1)
PFAM info
Representative CDS sequence
>Potri.017G085100.1 pacid=42814075 polypeptide=Potri.017G085100.1.p locus=Potri.017G085100 ID=Potri.017G085100.1.v4.1 annot-version=v4.1
ATGGGAATACTGCATGAAGCAAGGAAACTGGGGTTGCCATTAATGAATGTTGTGAGATTCAAAGGAATGCCCATTTTAGAGCAACTGTTTCTGGAGGAAA
AGCTGCTTCGTACTTCTTCAGATAATTGGTGTATTGTTAACGATGGAACTAATACTCCTTCCATTGTCATGGGCTTGTCTGGGAAAGCTTCAGAACTTCT
TGAACTTGGGTTTGTTTTACGAGATGAGGTTCCTGTCATCAGAAGGTTTACTGGTGGTGGAACTGTTATTGTTGACCATGGGACTATTTTTGTCACTCTT
ATATGCAACAAGGATGATGTTCCTGGAGTTCAACCATATCCTCGTTCCATCATGTCTTGGAGTGGTCTTTTGTATGGTCAGGTGTTGCGAGGGATTGGTG
ATTTCCAGCTCCGTGAGAATGATTATGTTTTTGGTGATCGCAAATTTGGTGGAAACGCACAATCTATAACCAAAAATCGTTGGATACACCATACTTCCTT
TTTATGGGATTATGAGGTCAAGAACATGGCTTACTTGAAGCTACCGGCTCGGGCTCCTGAATATAGATCGGCAAGAGACCACAGCGAATTCATTTGTCGC
GTGAAGGAATATTTGCCAAGATCACTTTTTGTTGAGAAAACCACAAAGGCTCTTGAAACCCATTTTTCACTGCAACCAGTGAATTCTGAGACAATTGGTG
CAGTTCATGAAGGAGGATTTGTTCACACCACTAGCCTTCTCACGAAGCAGGAACTCAAGGATGCTTTGGCATCTTCACTTGAGAGTATTGCTCACAGCAG
TTAG
AA sequence
>Potri.017G085100.1 pacid=42814075 polypeptide=Potri.017G085100.1.p locus=Potri.017G085100 ID=Potri.017G085100.1.v4.1 annot-version=v4.1
MGILHEARKLGLPLMNVVRFKGMPILEQLFLEEKLLRTSSDNWCIVNDGTNTPSIVMGLSGKASELLELGFVLRDEVPVIRRFTGGGTVIVDHGTIFVTL
ICNKDDVPGVQPYPRSIMSWSGLLYGQVLRGIGDFQLRENDYVFGDRKFGGNAQSITKNRWIHHTSFLWDYEVKNMAYLKLPARAPEYRSARDHSEFICR
VKEYLPRSLFVEKTTKALETHFSLQPVNSETIGAVHEGGFVHTTSLLTKQELKDALASSLESIAHSS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G29010 Biotin/lipoate A/B protein lig... Potri.017G085100
[exp]
0 1
AT2G18465 Chaperone DnaJ-domain superfam... Potri.019G010000
[exp]
6.00 0.7144
AT5G13050 5-FCL 5-formyltetrahydrofolate cyclo... Potri.012G072800
[exp]
11.44 0.7333
AT2G33255 Haloacid dehalogenase-like hyd... Potri.010G063700
[exp]
21.21 0.6882
AT2G19690 PLA2-BETA phospholipase A2-beta (.1.2) Potri.006G149700
[exp]
22.75 0.6884
AT1G55805 BolA-like family protein (.1) Potri.012G036800
[exp]
34.01 0.6894
Potri.001G280332
[exp]
42.62 0.6345
AT2G04740 ankyrin repeat family protein ... Potri.014G163200
[exp]
45.32 0.6030
AT5G17630 Nucleotide/sugar transporter f... Potri.013G071900
[exp]
45.39 0.6963
AT3G47520 pNAD-MDH, MDH plastidic NAD-dependent malate... Potri.017G102000
[exp]
47.69 0.6735 NEMDH.1
AT1G80670 RAE1 RNA export factor 1, Transduci... Potri.003G180000
[exp]
54.03 0.6945

Potri.017G085100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.