Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PtEXPA9,EXP2.7
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26770 354 / 5e-125 ATHEXPALPHA1.1, AT-EXP10, ATEXP10, ATEXPA10 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2) AT1G69530 354 / 8e-125 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT3G29030 354 / 8e-125 ATEXP5, ATHEXPALPHA1.4, ATEXPA5 ARABIDOPSIS THALIANA EXPANSIN A5, ARABIDOPSIS THALIANA EXPANSIN 5, expansin A5 (.1) AT2G03090 353 / 2e-124 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT5G56320 338 / 3e-118 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT2G40610 323 / 1e-112 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT5G02260 315 / 3e-109 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT5G05290 311 / 1e-107 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT2G39700 305 / 2e-105 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT2G37640 303 / 1e-104 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G123200 [exp] 409 / 2e-146 AT1G69530 334 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.008G088300 [exp] 370 / 6e-131 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.013G060800 [exp] 365 / 2e-129 AT2G03090 356 / 1e-125 EXPANSIN 15, expansin A15 (.1) Potri.010G167200 [exp] 358 / 2e-126 AT1G69530 335 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.001G001100 [exp] 354 / 8e-125 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.019G057500 [exp] 334 / 5e-117 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.016G135200 [exp] 332 / 3e-116 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.013G154700 [exp] 331 / 1e-115 AT2G40610 348 / 2e-122 expansin A8 (.1) Potri.006G108000 [exp] 324 / 6e-113 AT2G40610 379 / 2e-134 expansin A8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036763 [exp] 364 / 1e-128 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10033011 [exp] 354 / 2e-124 AT3G29030 389 / 2e-138 ARABIDOPSIS THALIANA EXPANSIN A5, ARABIDOPSIS THALIANA EXPANSIN 5, expansin A5 (.1) Lus10037164 [exp] 353 / 3e-124 AT1G69530 420 / 2e-150 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10026614 [exp] 344 / 9e-121 AT1G69530 431 / 7e-155 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10034227 [exp] 335 / 5e-117 AT2G40610 416 / 7e-149 expansin A8 (.1) Lus10008603 [exp] 331 / 2e-115 AT2G40610 397 / 2e-141 expansin A8 (.1) Lus10009917 [exp] 328 / 2e-114 AT2G40610 395 / 9e-141 expansin A8 (.1) Lus10042214 [exp] 325 / 4e-113 AT2G40610 393 / 7e-140 expansin A8 (.1) Lus10029038 [exp] 317 / 3e-110 AT2G40610 418 / 6e-150 expansin A8 (.1) Lus10040286 [exp] 310 / 5e-107 AT2G39700 447 / 4e-161 expansin A4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF01357 [poplar] [flax] Expansin_C Expansin C-terminal domain CL0199 [poplar] [flax] DPBB PF03330 [poplar] [flax] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Potri.017G085300.3 pacid=42813914 polypeptide=Potri.017G085300.3.p locus=Potri.017G085300 ID=Potri.017G085300.3.v4.1 annot-version=v4.1 ATGGCTCCTTTTGGGTTTCTTTTAGTGGGGTTTCTCTCCATTGTCTCGTCTGTTCATGGATATTATGGAGGTTGGATTAACGCACATGCCACTTTCTATG GAGGTGGCGATGCTTCAGGGACAATGGGCGGGGCTTGTGGCTATGGAAACCTCTACAGCCAGGGTTATGGAGCTAACACAGCAGCACTGAGCACTGCATT GTTCGACAATGGTCTGAGCTGCGGGGCTTGTTTTGAGATCAGATGTGTGAATGACCCTAAGTGGTGCCTGCGTGGCTCCATTGTGGTCACTGCCACTAAC TTTTGCCCTCCCGGAGGCTGGTGTGATCCTCCCAACAAGCATTTTGATCTCTCTCAACCTGTCTTCCAGCACATTGCCCAATATAGAGCTGGAATCGTCC CAGTAATTTACAGAAGGATAAGATGCAGGAAGAGTGGAGGCATTAGGTTCACCATCAATGGCCACTCATACTTCAATTTAGTCCTGATCACCAACGTTGG CGGCGCCGGTGATGTGCGTTCTGTGGCCATCAAGGGTTCAAGAACTCGATGGCAGGCAATGTCAAGAAACTGGGGCCAAAATTGGCAGAGTAATGCTTAC CTTGATGGGCAAAGTCTCTCTTTTCTAGTTACCACAAGTGATGGTCGCAGAGTGGTTTCTTACAATGTTGCCCCTGCTGGCTGGTCCTTTGGACAGACAT ACAGTGGAGGGCAGTTTAGGTACTAG
AA sequence Show only first row Show all	>Potri.017G085300.3 pacid=42813914 polypeptide=Potri.017G085300.3.p locus=Potri.017G085300 ID=Potri.017G085300.3.v4.1 annot-version=v4.1 MAPFGFLLVGFLSIVSSVHGYYGGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGANTAALSTALFDNGLSCGACFEIRCVNDPKWCLRGSIVVTATN FCPPGGWCDPPNKHFDLSQPVFQHIAQYRAGIVPVIYRRIRCRKSGGIRFTINGHSYFNLVLITNVGGAGDVRSVAIKGSRTRWQAMSRNWGQNWQSNAY LDGQSLSFLVTTSDGRRVVSYNVAPAGWSFGQTYSGGQFRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26770		ATHEXPALPHA1.1,...	ARABIDOPSIS THALIANA EXPANSIN ...		Potri.017G085300 [exp]	0	1	PtEXPA9,EXP2.7
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Potri.011G066800 [exp]	1.41	0.9064
AT5G22740		ATCSLA2, ATCSLA...	CELLULOSE SYNTHASE-LIKE A 2, A...		Potri.009G149700 [exp]	2.44	0.9092	ATCSLA02.1
					Potri.014G194201 [exp]	11.22	0.7945
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.014G019700 [exp]	18.41	0.9021
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.011G140700 [exp]	23.40	0.8889
AT1G68620			alpha/beta-Hydrolases superfam...		Potri.016G031500 [exp]	27.65	0.8735
AT5G62200			Embryo-specific protein 3, (AT...		Potri.015G132900 [exp]	27.74	0.8622
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.019G118900 [exp]	30.85	0.8700
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.018G051300 [exp]	30.93	0.8120
AT2G22490		CYCD2;1, ATCYCD...	Cyclin D2;1 (.1.2)		Potri.001G292300 [exp]	33.98	0.7978

Compare expression of checked genes

Potri.017G085300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.