Plant FIBer expression Database

Potri.017G085400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G01150 610 / 0 ATPTB1, PTB polypyrimidine tract-binding protein 1 (.1.2)
AT5G53180 542 / 0 ATPTB2 polypyrimidine tract-binding protein 2 (.1.2)
AT1G43190 140 / 1e-36 PTB3 polypyrimidine tract-binding protein 3 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G123300
[exp]
806 / 0 AT3G01150 636 / 0.0 polypyrimidine tract-binding protein 1 (.1.2)
Potri.012G029300
[exp]
548 / 0 AT5G53180 603 / 0.0 polypyrimidine tract-binding protein 2 (.1.2)
Potri.015G020800
[exp]
530 / 0 AT5G53180 581 / 0.0 polypyrimidine tract-binding protein 2 (.1.2)
Potri.005G194700
[exp]
139 / 2e-36 AT1G43190 745 / 0.0 polypyrimidine tract-binding protein 3 (.1.2.3)
Potri.002G066000
[exp]
137 / 2e-35 AT1G43190 726 / 0.0 polypyrimidine tract-binding protein 3 (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005233
[exp]
627 / 0 AT3G01150 598 / 0.0 polypyrimidine tract-binding protein 1 (.1.2)
Lus10030688
[exp]
580 / 0 AT3G01150 557 / 0.0 polypyrimidine tract-binding protein 1 (.1.2)
Lus10014931
[exp]
527 / 0 AT5G53180 617 / 0.0 polypyrimidine tract-binding protein 2 (.1.2)
Lus10038820
[exp]
468 / 3e-163 AT5G53180 567 / 0.0 polypyrimidine tract-binding protein 2 (.1.2)
Lus10028566
[exp]
94 / 2e-20 AT1G43190 678 / 0.0 polypyrimidine tract-binding protein 3 (.1.2.3)
Lus10018871
[exp]
89 / 9e-19 AT1G43190 680 / 0.0 polypyrimidine tract-binding protein 3 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0221 RRM PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence
>Potri.017G085400.6 pacid=42813298 polypeptide=Potri.017G085400.6.p locus=Potri.017G085400 ID=Potri.017G085400.6.v4.1 annot-version=v4.1
ATGTCAACGTCCGGACAGCCACAATTCCGATACACACAAACACCATCAAAGGTTTTGCATCTGCGAAACCTTCCATGGGAGTGCACAGAAGAAGAGCTTA
TCGAGCTCTGTGAACCTTTCGGAAAGATCGTCAACACTAAGTGCAATGTCGGCAACAATCGCAACCAAGCCTTCGTTGAATTCGCAGAACAAAACCAGGC
AATACAAATGGTATCGTATTATGCGTCGTCGTCGGAGCCAGCGCAGGTTCGGGGTAAAACGGTGTATATTCAATATTCGAATAGACATGAAATTGTGAAC
AATAAGAGTCCAGGTGATAATCCTGGAAATGTATTGCTGGTTACCATTGAGGGTGTTGAAGCTGGTGATGTCAGCATCGATGTCATTCACTTGGTGTTTT
CTGCTTTTGGCTATGTGCACAAAATTGCTACTTTTGAAAAGGCTGCTGGTTTCCAGGCATTAATTCAATTCACTGATGCTGAAACTGCATCTTCAGCGAG
AAATGCCTTGGATGGGAGAAGTATACCCAGGTACCTGCTTCCAGAGCATGTTGGTTCCTGCAACTTACGCATTTCATATTCTGCACATACTGATCTCAAT
ATCAAGTTCCAGTCCCATAGGAGCAGAGACTATACAAATCCGTATCTTCCTGTGAATCCTACTGCAATTGACGGACCTGTTCAGTCTACTGTAGGTGCTG
ATGGGAAAAAGAAAGAGCCTGAGAGCAATGTACTTCTTGCATCCATTGAGAACATGCAGTATGCTGTCACCGTGGATGTTCTTCACACGGTATTTTCTGG
ATTTGGTACTGTCCAGAAGATTGCTATATTTGAGAAAAATGGTGGAACACAGGCACTAATTCAGTACCCAGATGTTGCGACTGCAGCAGTAGCCAAAGAA
ACTCTGGAGGGACACTGCATTTATGATGGTGGCTATTGTAAGCTTCATCTATCATACTCTCGTCATACTGATCTCAATGTAAAGGCCTTTAGTGATAAAA
GTAGAGATTACACCATCCCGGATGCAAGTTTTCTCACAGCACAAGCTCCTGGCCTCCACACTGCTCCCACAACTTGGCAGAATCCTCAAGCTGGTTCAAT
GTACCTTGGGAGTAACTATGCCACCACAGCTGCTGCTCCTGCTCAAGTTCCTCCTGGGCAAGTGGCAGCTTGGGATCCGAGTATGCAGGCGGGTGGACCA
GGCTATTCATCAGTTCGCGGTATGTATCCTGGTCAAACATATCCAACACCCCCAGCATATGCTTCCTCAGCACTACCTCCAGGTTCCTCTCCCCATTCAT
ATAGCAGCCCGATTTCTCCTGGTGTGGCCTCCATGGGAATGACTCACCCAGGGGTGCAGCCAAACATGCGACCTGGTGGGGCTTCACCTCCTGGTCAGAC
TCCATATTATGGTCGATGA
AA sequence
>Potri.017G085400.6 pacid=42813298 polypeptide=Potri.017G085400.6.p locus=Potri.017G085400 ID=Potri.017G085400.6.v4.1 annot-version=v4.1
MSTSGQPQFRYTQTPSKVLHLRNLPWECTEEELIELCEPFGKIVNTKCNVGNNRNQAFVEFAEQNQAIQMVSYYASSSEPAQVRGKTVYIQYSNRHEIVN
NKSPGDNPGNVLLVTIEGVEAGDVSIDVIHLVFSAFGYVHKIATFEKAAGFQALIQFTDAETASSARNALDGRSIPRYLLPEHVGSCNLRISYSAHTDLN
IKFQSHRSRDYTNPYLPVNPTAIDGPVQSTVGADGKKKEPESNVLLASIENMQYAVTVDVLHTVFSGFGTVQKIAIFEKNGGTQALIQYPDVATAAVAKE
TLEGHCIYDGGYCKLHLSYSRHTDLNVKAFSDKSRDYTIPDASFLTAQAPGLHTAPTTWQNPQAGSMYLGSNYATTAAAPAQVPPGQVAAWDPSMQAGGP
GYSSVRGMYPGQTYPTPPAYASSALPPGSSPHSYSSPISPGVASMGMTHPGVQPNMRPGGASPPGQTPYYGR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G01150 ATPTB1, PTB polypyrimidine tract-binding p... Potri.017G085400
[exp]
0 1
AT5G46210 CUL4, ATCUL4 cullin4 (.1) Potri.004G132900
[exp]
2.23 0.7388
AT3G58560 DNAse I-like superfamily prote... Potri.006G195600
[exp]
10.00 0.7560
Potri.017G061501
[exp]
10.19 0.6957
AT1G27760 SAT32, ATSAT32 SALT-TOLERANCE 32, interferon-... Potri.014G016800
[exp]
10.67 0.7411
AT2G39760 ATBPM3 BTB/POZ/MATH-domains containin... Potri.010G199200
[exp]
11.87 0.7636
AT5G18550 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Potri.010G022500
[exp]
21.35 0.6838
AT2G41060 RNA-binding (RRM/RBD/RNP motif... Potri.005G081600
[exp]
25.23 0.7314
AT5G53180 ATPTB2 polypyrimidine tract-binding p... Potri.012G029300
[exp]
32.58 0.6676
AT5G54470 CO B-box type zinc finger family ... Potri.001G414700
[exp]
37.14 0.7193
AT1G10790 unknown protein Potri.001G210600
[exp]
37.68 0.7291

Potri.017G085400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.