Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15270 592 / 0 RNA-binding KH domain-containing protein (.1.2) AT1G14170 380 / 6e-127 RNA-binding KH domain-containing protein (.1.2.3) AT5G46190 191 / 5e-53 RNA-binding KH domain-containing protein (.1) AT4G18375 158 / 5e-42 RNA-binding KH domain-containing protein (.1.2) AT1G51580 159 / 7e-42 RNA-binding KH domain-containing protein (.1) AT5G53060 147 / 1e-37 RNA-binding KH domain-containing protein (.1.2) AT5G64390 122 / 7e-29 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) AT2G03110 111 / 1e-28 RNA binding;nucleic acid binding (.1) AT3G04610 80 / 1e-15 FLK flowering locus KH domain, RNA-binding KH domain-containing protein (.1) AT2G22600 76 / 2e-14 RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G123400 [exp] 842 / 0 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.008G088600 [exp] 504 / 1e-174 AT5G15270 454 / 5e-155 RNA-binding KH domain-containing protein (.1.2) Potri.010G167100 [exp] 499 / 9e-173 AT5G15270 455 / 3e-155 RNA-binding KH domain-containing protein (.1.2) Potri.017G114400 [exp] 258 / 3e-77 AT5G15270 259 / 8e-78 RNA-binding KH domain-containing protein (.1.2) Potri.004G066100 [exp] 195 / 7e-55 AT4G18375 558 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.011G082500 [exp] 178 / 1e-48 AT5G46190 525 / 5e-180 RNA-binding KH domain-containing protein (.1) Potri.002G112200 [exp] 178 / 2e-48 AT5G53060 243 / 7e-71 RNA-binding KH domain-containing protein (.1.2) Potri.010G251700 [exp] 170 / 1e-45 AT1G51580 434 / 9e-145 RNA-binding KH domain-containing protein (.1) Potri.015G011100 [exp] 166 / 3e-44 AT5G53060 699 / 0.0 RNA-binding KH domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030689 [exp] 682 / 0 AT5G15270 638 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10005232 [exp] 678 / 0 AT5G15270 634 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10037163 [exp] 464 / 3e-157 AT5G15270 491 / 1e-167 RNA-binding KH domain-containing protein (.1.2) Lus10036767 [exp] 456 / 6e-155 AT5G15270 483 / 2e-165 RNA-binding KH domain-containing protein (.1.2) Lus10038509 [exp] 200 / 2e-56 AT5G46190 653 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10023300 [exp] 199 / 4e-56 AT5G46190 643 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10028237 [exp] 157 / 1e-40 AT5G64390 243 / 8e-71 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10007236 [exp] 146 / 4e-37 AT5G64390 249 / 6e-73 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10022390 [exp] 142 / 5e-36 AT5G53060 692 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10033557 [exp] 138 / 8e-36 AT5G15270 201 / 3e-59 RNA-binding KH domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [poplar] [flax] KH PF00013 [poplar] [flax] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Potri.017G085500.2 pacid=42813511 polypeptide=Potri.017G085500.2.p locus=Potri.017G085500 ID=Potri.017G085500.2.v4.1 annot-version=v4.1 ATGGCGGGGCAGAGGAATAGTTACGGGAAGCGGGCTCATTCGCAGTCAGATTATGATATTGGTGGAAATAAGAGGAGAAATTCCGGTGATGATAGAGAAC GTTTTGTTATTGATTCGCAAGATACTGTGTATCGGTATTTGTGTCCGGCTAGGAAGATTGGGAGCATAATAGGAAGGGGAGGGGAGATTATTAAGCAATT AAGGATTGACACTAAGTCAAAGATTAGGGTTGGTGAAACAGTGCCGGGCTGTGAAGAACGTGTTGTTACCATCTATAGCCCGAGTGATGAGACTAATGAA TATGAAGACAGTGGTAATTACATTTCTCCTGCACAGGATGCTCTGTTCAGGGTGCATGATAAGGTTATTGCAGAAGATTTGCAAGTTGAAGATGACTCTG AAGGAAGTCCACAAGTCACCGCAAAGCTTCTTGTACCATCTGATCAGATAGGATGTATTATTGGGAAAGGTGGGCAGATAGTTCAGAACATACGCAGTGA GACTGGTGCAGTGATCCGCATTCTCAAGGATGAGCATTTACCTCCTTGTGCGTTAAGCTCAGATGAGCTTGTACAGATTTCTGGTGAAGCTGCAGTTCTC AAAAAGGCTTTATATCAAATAGCATCTCGCCTTCACGATAATCCATCACGGTCTCAGCACTTGCTTGTTTCTGCTGTTCCAAATGTGTACTCTTCTGTTG GTTCCCTGGTAGGTCCATCTGCAGCTGCCCCAATTGTTGGAATTGCTCCTCTCATGGGTCCTTATGGTGGTTTCAAAGGTGATACTGGAGACTGGTCTCG ATCATTATATTCAGCTCCAAGAGATGAACTTGCTTCGAAAGAATTTTCACTTCGTGTGGTATGTCCAACTGCCAACATTGGTGCTGTAATTGGGAAAGGT GGTACCATCATCAACCAGATCAGACAGGAGTCTGGAGCAACAATCAAAGTTGATAGTTCAGTTGCTGAAGGAGATGATTGCTTGATAACTATTTCAGCGA AGGAGATCTATGATCACTATTCTCCAACAATAGAAGCAGCCGTACGTTTGCAACCTAGATGTAGTGAGAAAATGGAAAGAGATTCAGGTCTTATCTCTTT TACTACCCGTCTACTTGTGCCCTCCTCTCGAATTGGGTGCCTTCTGGGTAAAGGAGGAGCTATTATAGATGAGATGAGGAAACTTACCAAAGCTATTATT CGAATACCTAGAAAGGAAAATCTTCCCAAAGTTGCATCTGATGATGATGAGATGGTGCAGATTGCTGGAGACCTGGATGTTGCCAAGGATGCTCTCATAC AAATAAGTCGACGGTTAAGAGCTAATGTTTTTGACAGGGAAGGTGCAATGTCTGCTATTCTACCAGTTTTACCATACCTTCCTGTCTCAGCTGAAGGTTC GGAGGGTCTAAATTATGACAGTAGAGATGGTAAAAGACATGGACGTGGAAGCTCTTATGCTGGTGGCTATAGCTCAAGTGATTATGCTTCTGGTGACGGT TATGGTAGCTATGGTAGCTCACAGATTAATGCTAGTGGAGGTCCTTATGGAGCCTATGGAAGTTATTCTTCAGGACGCACTGGTACTTCCGGGTTATCTG GCCAGGCCCCTGTTTCTCGACGCAAAAGCTATTACTAG
AA sequence Show only first row Show all	>Potri.017G085500.2 pacid=42813511 polypeptide=Potri.017G085500.2.p locus=Potri.017G085500 ID=Potri.017G085500.2.v4.1 annot-version=v4.1 MAGQRNSYGKRAHSQSDYDIGGNKRRNSGDDRERFVIDSQDTVYRYLCPARKIGSIIGRGGEIIKQLRIDTKSKIRVGETVPGCEERVVTIYSPSDETNE YEDSGNYISPAQDALFRVHDKVIAEDLQVEDDSEGSPQVTAKLLVPSDQIGCIIGKGGQIVQNIRSETGAVIRILKDEHLPPCALSSDELVQISGEAAVL KKALYQIASRLHDNPSRSQHLLVSAVPNVYSSVGSLVGPSAAAPIVGIAPLMGPYGGFKGDTGDWSRSLYSAPRDELASKEFSLRVVCPTANIGAVIGKG GTIINQIRQESGATIKVDSSVAEGDDCLITISAKEIYDHYSPTIEAAVRLQPRCSEKMERDSGLISFTTRLLVPSSRIGCLLGKGGAIIDEMRKLTKAII RIPRKENLPKVASDDDEMVQIAGDLDVAKDALIQISRRLRANVFDREGAMSAILPVLPYLPVSAEGSEGLNYDSRDGKRHGRGSSYAGGYSSSDYASGDG YGSYGSSQINASGGPYGAYGSYSSGRTGTSGLSGQAPVSRRKSYY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15270			RNA-binding KH domain-containi...		Potri.017G085500 [exp]	0	1
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Potri.002G205025 [exp]	3.46	0.7216
AT2G20050			protein serine/threonine phosp...		Potri.018G084900 [exp]	8.94	0.6254
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Potri.001G160700 [exp]	9.16	0.6595
AT1G25540		MED25, PFT1	PHYTOCHROME AND FLOWERING TIME...		Potri.010G128600 [exp]	11.48	0.6710	PFT1.1
AT2G43210			Ubiquitin-like superfamily pro...		Potri.007G123800 [exp]	19.18	0.6327
AT3G49430		SRP34A, SR34a, ...	Serine/Arginine-Rich Protein S...		Potri.012G021800 [exp]	20.59	0.6538
AT1G60900			U2 snRNP auxilliary factor, la...		Potri.004G040900 [exp]	25.23	0.5714
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Potri.014G047600 [exp]	28.37	0.6088
AT5G55000		FIP2	potassium channel tetramerisat...		Potri.013G062500 [exp]	31.46	0.6180
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Potri.013G035600 [exp]	32.40	0.6479	XRN4.2

Compare expression of checked genes

Potri.017G085500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.