Plant FIBer expression Database

Potri.017G086000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G15280 984 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
AT1G09900 166 / 8e-43 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
AT3G22470 166 / 1e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1)
AT5G39710 167 / 3e-42 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
AT1G12620 165 / 3e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1)
AT4G19440 166 / 9e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
AT1G12775 162 / 5e-41 Pentatricopeptide repeat (PPR) superfamily protein (.1)
AT5G65560 162 / 1e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1)
AT5G55840 163 / 2e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1)
AT5G64320 157 / 3e-39 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G105400
[exp]
184 / 6e-47 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Potri.001G368700
[exp]
181 / 4e-46 AT5G55840 1272 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Potri.001G236800
[exp]
176 / 7e-45 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Potri.002G109500
[exp]
164 / 3e-42 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Potri.016G025600
[exp]
165 / 7e-42 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Potri.001G276500
[exp]
163 / 3e-41 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Potri.003G105700
[exp]
163 / 8e-41 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Potri.006G264800
[exp]
162 / 3e-40 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1)
Potri.009G105600
[exp]
160 / 3e-40 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033008
[exp]
1170 / 0 AT5G15280 889 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Lus10026558
[exp]
187 / 4e-48 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Lus10013841
[exp]
180 / 5e-46 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Lus10010410
[exp]
180 / 6e-46 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Lus10012139
[exp]
177 / 7e-45 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Lus10010407
[exp]
166 / 1e-41 AT5G59900 981 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Lus10039056
[exp]
164 / 2e-41 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Lus10013283
[exp]
161 / 9e-41 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2)
Lus10037968
[exp]
164 / 1e-40 AT5G55840 1131 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Lus10036020
[exp]
159 / 1e-39 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF01535 PPR PPR repeat
CL0020 TPR PF12854 PPR_1 PPR repeat
CL0020 TPR PF13041 PPR_2 PPR repeat family
Representative CDS sequence
>Potri.017G086000.1 pacid=42813889 polypeptide=Potri.017G086000.1.p locus=Potri.017G086000 ID=Potri.017G086000.1.v4.1 annot-version=v4.1
ATGAAATCAAGAAGTAGAAGCAAGCTTCTCTGCAATCAAATGCTGCAAAACCTATCATATTTCACCTCCAATAATGCTAAACTTGAAAGGGTCAGTTCTC
TTTTCACTCACATCTCCATTGAATTTCGATTCTTTACATGTTCTCTCACTGACCCTTCACTAAAACCCCACAAAGATTTATCGTCTTTTAACTTTAATGG
TATTGCGCACTCTGTTATATCTAAGTGTTCTCATTTCTTTGATAAAAAAGAACCCAAAAGACGCAACTTTCTTTATGATGCTTCTTTTAAAATGCCGCTC
TTAGATATCTCTGATGTAATACCTCATGTTACACGTCGGTTTTTGAGGGTTTTGAGGTTGAAACCAGAAGATGTGCTTGAAATGTTACTGGGTTTTCAAT
TTGAGTGTGAAAGAGTTGCAGTCAAGAGTACAAAGGTGGAGTCATTATGGGAGATTTTTAAGTGTGCTAACGAACAAGATAAGGGTTTTAGGCATTTTCC
CAAGTCATGTGAGGTTATGGCTTCTATTCTTGTTAGGCATGGGATGTTTAGAGAGGCTCAGTTATTGCTTTTGGCAATGGAGAGACAAGGAATTTCAATG
GACAGTAGTAAGATTTTTGTTAGTTTGATTGAAGGGTATGTTGGTGTTGGTGATTTAGAAAGGGCTGTCTTAGTGTATGATCAAATGAGGGACCGAGATT
TAGTGCCATCGTTGTTGTGTTGTCGTGCTCTTGTTGATCTTTCAGTAAGAATGAAGAGAACCCAGCTAGCATTTCGAGTTTCTTTAGATCTGGTAGAATT
GGGGATTAGTGTAAGCGAAGGAGAAAATGCTAGTTTTGAGAATGTTGTAAGATTACTTTGTAGGGATGGAATGATTCGAGAAGCAAGGAATTTTATTAGG
AAGTTAATGGCCTTGGGTTTTGAGCCTAGCAGCTTGGTTCTTAATGAGATTGCTCTTGGGTACTGTGAGCAGGACTTTGAGGATTCAGTAAGGTGTTTTG
CTGAAATGAAATGTTCCCCAAATGTGCTTACTGGCAATAAGATTTTATTTAGTTTATGTACTGGTTTTGGTGTAGAGAGAGCAAATTTGTTCAGACTCAA
ATTGGAGCACTTGGGTTTTATGCCTGATGAAGTAACTTTTGGGATCTTGATTTGTTGGTGTTGTCGTGAAAGGAAATTGAGTGGTGCCTTCAATTATTTA
TCAGAGTTGTTATCTCGAGGCCTAAAACCCAATATATGGTGCTATCATGCTCTTATCAGTGCGTTGTTTAAAGAAGGCATGTGGGAGCATGCACAAGACA
TTCTTGATGAAATGGTGGATATGGGAACAGCCCCTGTTTTGTCAACTTTCAAAATTCTTTTGGCAGGATATTGCAGGGCTAGACGATTTGATGAAGTAAA
GGTGGTGATTCATGAGATGGTGAACCGTGGTCTAATTGAATCATCTGCACTCGAGGATCCTCTTTCAAAGGCATTTATGGTCTTGGAGCTCAAGACTTTA
TCAGTGCGGTTGAAAAGGGACAATGATGTTGAGTTTTCTAAGACAGAATTCTTTGATAACCTTGGTAATGGACTTTATTTGGATACAGACCTGGATGAGT
ATGACAAAAGAGTAACGGGGATACTTGAAGATTCTATGGTTCCTGATTTTGATTTTCTAGTAAGGAAGGAATGCAGTAATGGAAATTTTAAAGTTGCATA
CTCATTGACCGGTGAAATGGCTCGATGGGGTCAAGAACTGTCTCTCTCTGTTGTCTCTGCATTATTAAAGGGGCTTTGCACTCCTCGTTCCTATATCAAG
TTATGCAGCAGTCTTTTGGAGAAGATGCCAAAGCTGGTTAATCAACTAGACCAAGAAGTTCTCAATTTGCTAGTCCAAGCATACTGCAAAATTGGATTGA
CACACAAAGGGTGGTTGATTTTTAATCAAATGCTTCAAAGAAATCTAACAATTAACAGTGAAACATTTACTGCTCTAATTAAGGGACTGTGTAAGAAGGA
AAATTTGCGGAACCTTCATGATTGCTGGGATTTTGCTCTAAATGGTAAATGGTTACCAGGGTTGGTGGATTGTATATCTGTGGTTGAATGTCTGTGCCAT
TGTGGAATGCTGAAGGAGGTACTAGAGCTTTTGGAAAGGATGTTGGTATTGAATCCTGAATCAAGGTTAAAAGTTTTACATATCTTCCTTGAAAAGCTTT
CTCTTACTGGCTTTTCGAGCATTGCACACTTGTTTGTGGAAGAACTACTACAGCATGGTTGTGCCTTAGATCAAATTGCATATAGCCATCTTATAAAGGG
GTTATGCAAGGAGCAAAAGTATAAAGTTGCCTTCGCAGTATTAGACATAATGCTTGCTAGGAAAATGGTTCCGTGCTTGGACGTATCTCTAATTCTGATT
CCTCAGCTGTGTAAGGCTGATAAACTTCAGACAGCTATTGAATTAATGGAAAATGTTTTGAGGGTGCGAACTACATTCCACAGCGATTTTACTAAAAGAT
TTTGTGTGACAGGAAAGGCTGGGGAAGCAGCCAATATTTTCCAGAATATGCTGTCCAAGGGGCTGCTACCTGATGCTGATATTTATAATATGCTGTTGCA
ACAATTCTGCCACACCAAAAACTTGAAGAAAGTCAGGGAGTTACTTGGTGTTGTCATAAGAAAAACTGCAAGCCTCACAATCTCGAGTTATCGCAGTTAT
GTGCGTTTGATGTGTTTAGAGGGTAAAGTGGATTATGCATTGAGCCTGAAGAAGGTAATGGTGCAAGAAAGCAAGTCTGCTAGCATCATCCTATACAACA
TTCTGATTTTCTATCTTCTCACTGCTGGGGAAAGTATGCACGTGAAGAAGGTTTTGAATGAATTACAGGAGGAGGGGTTGGTGCTCAATGAAGTTACATA
TAATTTTCTGGTATATGGATTTTCTAAATGCAAAGATGTCTCTACTGGTATGCACTATCTGTCTACAATGATTTCAAAGGAGCTTAGGCCTAGTTATCGA
AGCTTAAGCACAGTAATAACCTTCCTATGTGATATAGGGGAACTTGATAAAGTATTGGAATTGAGTCGAGAAATAGAATTGAAAGGCTGGATTCTTGGTT
CAATTGCTCAAAATGCAATTGTTGAGGGCCTTCTTTTCCAGGATAAGGTTGAAGCAGCTAAACAATTTCTGGACCGAATGGTATATAAAGGTTTAACTCC
TCAAAGTATTAGTTATGATAATTTAATTAAGCGGTTTTGTTGCCTTGGAAGACTGGACAAGGCTATTGACCTTCTGAATGTAATGTTGAAGAAAGGAAAT
ATGCCTAGTTCTACCAGTTATGATTCTGTAATTTGTGGTTTCTGCTCTAGAAATCAACTGAACCAAGCTATGGATTTCCATGCTGAGATGTTGGATAGGA
ATCTTAAGCCAAGTATCAACACATGGGACTTGCTTGTCAAACAGTATTGCCAACAAGGACAACCTGCAGAAGCAGCAAAGCTCCTTCTTTCAATGGTTCA
GGTCGGCGAGACTCCAACCAGGCTGATGTACTGCTCTGTAATCGATGGTTATCGCATGGAAAACAATCCAAGGAAGGCATCAGAGCTAATGCAAATGATG
CAACAAAGTGGTTATGAGCCAGATTTTGATACGCATTGGTCTCTTATTAGCAATTTAAGCAATTCGAGTGACAAGGATTATAATAAAAGCAGTCAGGGTT
TCCTGTCAAGCCTTCTCGCTGGAAGTGGATTCTCTTCCAAGAAGGACCTCAATGCCAAACTGGGTTAA
AA sequence
>Potri.017G086000.1 pacid=42813889 polypeptide=Potri.017G086000.1.p locus=Potri.017G086000 ID=Potri.017G086000.1.v4.1 annot-version=v4.1
MKSRSRSKLLCNQMLQNLSYFTSNNAKLERVSSLFTHISIEFRFFTCSLTDPSLKPHKDLSSFNFNGIAHSVISKCSHFFDKKEPKRRNFLYDASFKMPL
LDISDVIPHVTRRFLRVLRLKPEDVLEMLLGFQFECERVAVKSTKVESLWEIFKCANEQDKGFRHFPKSCEVMASILVRHGMFREAQLLLLAMERQGISM
DSSKIFVSLIEGYVGVGDLERAVLVYDQMRDRDLVPSLLCCRALVDLSVRMKRTQLAFRVSLDLVELGISVSEGENASFENVVRLLCRDGMIREARNFIR
KLMALGFEPSSLVLNEIALGYCEQDFEDSVRCFAEMKCSPNVLTGNKILFSLCTGFGVERANLFRLKLEHLGFMPDEVTFGILICWCCRERKLSGAFNYL
SELLSRGLKPNIWCYHALISALFKEGMWEHAQDILDEMVDMGTAPVLSTFKILLAGYCRARRFDEVKVVIHEMVNRGLIESSALEDPLSKAFMVLELKTL
SVRLKRDNDVEFSKTEFFDNLGNGLYLDTDLDEYDKRVTGILEDSMVPDFDFLVRKECSNGNFKVAYSLTGEMARWGQELSLSVVSALLKGLCTPRSYIK
LCSSLLEKMPKLVNQLDQEVLNLLVQAYCKIGLTHKGWLIFNQMLQRNLTINSETFTALIKGLCKKENLRNLHDCWDFALNGKWLPGLVDCISVVECLCH
CGMLKEVLELLERMLVLNPESRLKVLHIFLEKLSLTGFSSIAHLFVEELLQHGCALDQIAYSHLIKGLCKEQKYKVAFAVLDIMLARKMVPCLDVSLILI
PQLCKADKLQTAIELMENVLRVRTTFHSDFTKRFCVTGKAGEAANIFQNMLSKGLLPDADIYNMLLQQFCHTKNLKKVRELLGVVIRKTASLTISSYRSY
VRLMCLEGKVDYALSLKKVMVQESKSASIILYNILIFYLLTAGESMHVKKVLNELQEEGLVLNEVTYNFLVYGFSKCKDVSTGMHYLSTMISKELRPSYR
SLSTVITFLCDIGELDKVLELSREIELKGWILGSIAQNAIVEGLLFQDKVEAAKQFLDRMVYKGLTPQSISYDNLIKRFCCLGRLDKAIDLLNVMLKKGN
MPSSTSYDSVICGFCSRNQLNQAMDFHAEMLDRNLKPSINTWDLLVKQYCQQGQPAEAAKLLLSMVQVGETPTRLMYCSVIDGYRMENNPRKASELMQMM
QQSGYEPDFDTHWSLISNLSNSSDKDYNKSSQGFLSSLLAGSGFSSKKDLNAKLG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G15280 Pentatricopeptide repeat (PPR)... Potri.017G086000
[exp]
0 1
AT1G69290 Pentatricopeptide repeat (PPR)... Potri.008G095800
[exp]
2.44 0.8145
AT4G14590 EMB2739 embryo defective 2739 (.1) Potri.001G277200
[exp]
3.60 0.7630
AT5G50990 Tetratricopeptide repeat (TPR)... Potri.012G109300
[exp]
3.87 0.7865
AT5G64320 Pentatricopeptide repeat (PPR)... Potri.013G002800
[exp]
5.29 0.7989
AT5G12080 ATMSL10, MSL10 mechanosensitive channel of sm... Potri.006G222500
[exp]
6.48 0.7223
AT1G03760 Prefoldin chaperone subunit fa... Potri.017G012500
[exp]
7.34 0.7441
AT5G23110 Zinc finger, C3HC4 type (RING ... Potri.005G093000
[exp]
8.94 0.7661
AT1G13030 sphere organelles protein-rela... Potri.008G185100
[exp]
10.39 0.7804
AT4G20020 unknown protein Potri.004G218650
[exp]
10.58 0.7924
AT5G59900 Pentatricopeptide repeat (PPR)... Potri.001G236800
[exp]
10.81 0.7239

Potri.017G086000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.