Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15300 675 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74630 425 / 2e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G29230 389 / 6e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 385 / 1e-125 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 377 / 6e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 372 / 7e-122 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G08305 366 / 8e-121 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G05240 365 / 4e-120 MEF19 mitochondrial editing factor 19 (.1) AT2G22410 366 / 7e-119 SLO1 SLOW GROWTH 1 (.1) AT3G12770 365 / 2e-118 MEF22 mitochondrial editing factor 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G035900 [exp] 419 / 4e-140 AT1G74630 884 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G125500 [exp] 416 / 2e-139 AT3G29230 829 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G258766 [exp] 407 / 2e-136 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.008G121400 [exp] 404 / 2e-135 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G012600 [exp] 398 / 2e-131 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 388 / 3e-128 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G202600 [exp] 384 / 6e-128 AT2G42920 660 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.009G044700 [exp] 390 / 2e-127 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G140400 [exp] 381 / 2e-126 AT3G29230 398 / 2e-132 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023592 [exp] 405 / 2e-134 AT1G74630 840 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 401 / 5e-132 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019797 [exp] 394 / 1e-130 AT3G29230 768 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014113 [exp] 394 / 2e-130 AT3G29230 767 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039974 [exp] 384 / 3e-127 AT1G06150 612 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10008825 [exp] 378 / 6e-125 AT1G06150 614 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10014298 [exp] 380 / 1e-124 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033858 [exp] 375 / 1e-123 AT1G08070 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 375 / 8e-123 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024222 [exp] 370 / 4e-122 AT1G74630 719 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.017G086100.1 pacid=42813358 polypeptide=Potri.017G086100.1.p locus=Potri.017G086100 ID=Potri.017G086100.1.v4.1 annot-version=v4.1 ATGATAAGAAAAAGAACAAACGATAGGAGCACCAATCGCAAGCAGCCGTCAAGCCTATGGAAAAACTGCAACAATCTTCTTGCTCTAAAGCAAATCCACG CTACCCTTATAATCAAAGGGTTCAATTCAAACCGAGCAGCCCTCAGAGAGCTCATATTTGCTGGTGCTATGACCATTTCTGGTGCTATAAACTATGCCCA CCAAGTGTTTGCTCAAATTACTGAACCAGACATTTTCATGTGGAATACAATGATGAGAGGTTCATCTCAAAGCAAAAATCCTTCAAAAGTAGTTTTACTT TATACCCAGATGGAGAATCGAGGTGTAAAGCCTGATAAGTTCACGTTTTCTTTCTTGCTTAAAGGTTGTACTAGGCTTGAATGGAGAAAGACTGGTTTTT GTGTTCATGGGAAGGTTTTGAAATATGGGTTTGAAGTGAATTCTTTTGTGAGAAATACCCTTATTTATTTTCATTCTAATTGTGGGGATTTGGTGATAGC TAGATCGATTTTTTATGATTTGCCGGAAAGGAGTGTTGTTTCTTGGTCTGCTTTGACTGCGGGGTATGCAAGGAGAGGGGAACTGGGTGTGGCGAGGCAA ATTTTTGATGAAATGCCAGTGAAAGATTTGGTTTCCTGGAATGTGATGATTACAGGGTATGTGAAAAATGGAGAGATGGAAAATGCTAGGACACTCTTTG ACGAGGCTCCAGAAAAAGATGTTGTGACTTGGAATACGATGATTGCTGGGTATGTCCTTCGTGGGGAGCAAAGGCAGGCTTTGGAGATGTTTGAGGAGAT GAGGAACGTGGGAGAGTGTCCAGATGAGGTGACAATGCTGAGTCTTTTGTCGGCATGTGCAGATTTGGGTGATTTGCAGGTTGGCAGAAAGTTGCATTGC TCAATTTCAGAGATGACTCGCGGAGATTTGAGTGTTTTACTTGGGAATGCACTTGTTGACATGTATGCGAAGTGTGGAAGTATCGAGATAGCACTTCAGG TATTTAAAAAGATGAGAGAGAAAGATGTTACAACATGGAATTCAGTTATAGGAGGGTTGGCTTTTCATGGCCATGCTGAGGAATCAATCAAATTGTTTGC TGAGATGCAGGCTTTGAAAAATATTAAGCCAAATGAGATAACTTTTGTTGGAGTGATTGTTGCTTGTAGTCATGCCGGGAATGTTGAAGAGGGGCGCCGG TATTTCAAACTTATGAGAGAGAGGTATGATATAGAGCCAAATATGATACATCATGGGTGTATGGTGGATTTGTTGGGTCGTGCAGGGCTATTGAGTGAAG CATTCGAGTTAATAGCCAAAATGGAGATTGAACCTAATGCTATAATTTGGAGGACGCTGCTTGGGGCTTGTAGAGTTCATGGAAATGTTGAGCTGGGGAG GCTTGCAAATGAGAGACTACTTAAACTAAGAAGGGATGAGAGTGGGGATTATGTGTTACTTTCTAACATATATGCTTCAGCAGGTGAGTGGGATGGAGCT GAGGAGGTGAGGAAGTTGATGGATGATGGTGGAGTTAGAAAAGAAGCTGGCCGCAGCCTAATTGAAGCAGATGACAGAGCTGTCATGCAATTCTTGTTTG ATCCAAAACCCAAACTAAATTCAAGAGGCCAAGTGTCATGA
AA sequence Show only first row Show all	>Potri.017G086100.1 pacid=42813358 polypeptide=Potri.017G086100.1.p locus=Potri.017G086100 ID=Potri.017G086100.1.v4.1 annot-version=v4.1 MIRKRTNDRSTNRKQPSSLWKNCNNLLALKQIHATLIIKGFNSNRAALRELIFAGAMTISGAINYAHQVFAQITEPDIFMWNTMMRGSSQSKNPSKVVLL YTQMENRGVKPDKFTFSFLLKGCTRLEWRKTGFCVHGKVLKYGFEVNSFVRNTLIYFHSNCGDLVIARSIFYDLPERSVVSWSALTAGYARRGELGVARQ IFDEMPVKDLVSWNVMITGYVKNGEMENARTLFDEAPEKDVVTWNTMIAGYVLRGEQRQALEMFEEMRNVGECPDEVTMLSLLSACADLGDLQVGRKLHC SISEMTRGDLSVLLGNALVDMYAKCGSIEIALQVFKKMREKDVTTWNSVIGGLAFHGHAEESIKLFAEMQALKNIKPNEITFVGVIVACSHAGNVEEGRR YFKLMRERYDIEPNMIHHGCMVDLLGRAGLLSEAFELIAKMEIEPNAIIWRTLLGACRVHGNVELGRLANERLLKLRRDESGDYVLLSNIYASAGEWDGA EEVRKLMDDGGVRKEAGRSLIEADDRAVMQFLFDPKPKLNSRGQVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15300			Pentatricopeptide repeat (PPR)...		Potri.017G086100 [exp]	0	1
AT5G63290			Radical SAM superfamily protei...		Potri.012G092900 [exp]	1.00	0.9768
AT5G58920			unknown protein		Potri.009G042300 [exp]	4.79	0.9108
AT2G31810			ACT domain-containing small su...		Potri.007G142300 [exp]	6.48	0.9309
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Potri.001G217600 [exp]	7.93	0.9290
AT1G65030			Transducin/WD40 repeat-like su...		Potri.012G107400 [exp]	8.24	0.9197
AT1G06190			Rho termination factor (.1.2)		Potri.002G037800 [exp]	10.39	0.9451
AT5G25752		ATRBL11	ARABIDOPSIS RHOMBOID-LIKE PROT...		Potri.018G037300 [exp]	13.74	0.9429
AT3G53900		UPP, PYRR	PYRIMIDINE R, uracil phosphori...		Potri.006G091000 [exp]	18.33	0.9239
AT4G25270		OTP70	organelle transcript processin...		Potri.015G128800 [exp]	18.70	0.9328
AT2G46735			unknown protein		Potri.002G178100 [exp]	20.19	0.9334

Compare expression of checked genes

Potri.017G086100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.