Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CGS1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01120 721 / 0 AtCGS1, ATCYS1, CGS1, MTO1 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G33320 578 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT3G57050 236 / 2e-71 CBL cystathionine beta-lyase (.1.2.3) AT1G64660 161 / 7e-44 ATMGL methionine gamma-lyase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G038200 [exp] 223 / 1e-66 AT3G57050 714 / 0.0 cystathionine beta-lyase (.1.2.3) Potri.001G084000 [exp] 155 / 2e-41 AT1G64660 689 / 0.0 methionine gamma-lyase (.1) Potri.003G187032 [exp] 96 / 3e-22 AT1G64660 288 / 2e-96 methionine gamma-lyase (.1) Potri.003G146600 [exp] 47 / 2e-05 AT1G64660 239 / 1e-76 methionine gamma-lyase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030694 [exp] 766 / 0 AT3G01120 702 / 0.0 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10005226 [exp] 732 / 0 AT3G01120 741 / 0.0 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10039016 [exp] 220 / 2e-65 AT3G57050 688 / 0.0 cystathionine beta-lyase (.1.2.3) Lus10027313 [exp] 218 / 2e-64 AT3G57050 683 / 0.0 cystathionine beta-lyase (.1.2.3) Lus10000880 [exp] 172 / 8e-48 AT1G64660 639 / 0.0 methionine gamma-lyase (.1) Lus10017333 [exp] 164 / 2e-44 AT1G64660 676 / 0.0 methionine gamma-lyase (.1) Lus10001672 [exp] 150 / 2e-40 AT1G64660 546 / 0.0 methionine gamma-lyase (.1) Lus10000881 [exp] 149 / 1e-39 AT1G64660 588 / 0.0 methionine gamma-lyase (.1) Lus10033233 [exp] 132 / 4e-34 AT1G64660 377 / 8e-130 methionine gamma-lyase (.1) Lus10001671 [exp] 66 / 3e-12 AT1G64660 242 / 2e-79 methionine gamma-lyase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF01053 [poplar] [flax] Cys_Met_Meta_PP Cys/Met metabolism PLP-dependent enzyme
Representative CDS sequence Show only first row Show all	>Potri.017G086500.1 pacid=42814196 polypeptide=Potri.017G086500.1.p locus=Potri.017G086500 ID=Potri.017G086500.1.v4.1 annot-version=v4.1 ATGGCCGTCTCTTCTTGTCCGTGTCCTAAGCTCTTCGTCGCCTCCTCTTTCGAGTGCCGTTCCGACTCCTCCTCAAGCGCGGACCAGCCCAGTCAAGGCC GATCCAACTCCGCTCGCCATGGAACCACACCCTTTTTATCTGGCGCCGGCATGTCCTCTCTGATTCTCAAATTTCCTCCCAACTTCGTTCGCCAGCTTAG CACTAAAGCTCGAAGAAACTGCAGCAACATCGGCGTCGCGCAAATCGTTGCTGCCTCGTGGTCTAACAACTCCGCCGCAGGTGCTCCATCCGCGGCGGCG GCGGCTGCTGCTGCAGCTGCTGCCTCCGCAATCCCCGCAGCCGAGCCGGCCAAGACCTTGGCCGGAAATGAGGTGGTGGGGATTGATAGCAGTGATAATA AGAATGTAAGTGTTGTACAGTTGGAGGATTTGAGTAGCGATTTGGAATACAAGTCGTTTTTGAGTTCTGATGGAAGCATTGCAGTTCACGCTGGTGAAAG ATTAGGTCGCGGTATAGTGACAGATGCAATCACAACTCCGGTGGTTAATACTTCTGCTTATTTCTTTAAGAAAACCCAAGAGCTTATTGATTTCAAGGAG AAGCGCCATGCAAGTTATGAATATGGTAGGTATGGAAATCCGACCACACAGGTTTTGGAGGACAAGATAAGTGAGCTTGAAGGAGCGGAATCAACATTGA TTTTGGCATCTGGGATGTGTGCTAGTACTGTCTTGTTGTTGGCGTTGGTACCTGCTGGTGGTCATCTTGTGACAACCACAGATTGCTATAGGAAGACTAG GATTTTCATGGAGACTTTTCTTCCTAAGATGGGGATCACGGTTACTGTGATTGACCCTGCAGATGTGAAAGCTTTGGAATCTGCACTTGAGATCAACAAA GTTTCTCTTTTCTTCACCGAGTCTCCTACCAATCCATTCCTGAGATGTGTTGACATTGAATTGGTTTCAGAGCTTTGCCACAGAAAAGGAGCATTAGTCT GCATTGATGGTACCTTTGCAACACCTCTAAACCAGAAAGCCCTTGCTCTTGGAGCTGATCTTATTCTGCACTCTGCAACAAAGTTCATCGGGGGACACAA TGATGTCCTTGGAGGATGCATAAGTGGTTCCACAAAGGTAGTTTCAGAGATTCGTAATTTGCATCATGTTTTGGGAGGTACACTCAACCCGAATGCTGCC TATCTGATCATCCGAGGCATGAAGACACTGCATCTTCGTGTACAGCAACAGAACTCAACAGCATTGAGGATGGCCAAAATTTTAGAGGCGCATCCCAAGG TGAGGTGCGTTTATTATCCAGGCTTGCCAAGTCATCCTGAACATCACATTGCTAAGAAGCAGATGACTGGTTTTGGTGGTGTGGTGAGCTTCGAGGTTGA TGGAGACTTGTTCATCACCTCAAAATTTGTGGATGCATTGAAAATTCCTTATATTGCCCCTTCTTTTGGAGGCTGCGAGAGCATTGTGGATCAGCCAGCC ATTATGTCTTACTGGGATCTGAGTCGATCAGAGAGAGAAAAGTATGGGATTAAGGACAACTTGGTTCGGTTCAGCTTTGGAGTTGAAGACTTCGAAGATT TGAAGGCTGATATACTTCAAGCTCTGGAGACCATAGAGAGTGCTTGA
AA sequence Show only first row Show all	>Potri.017G086500.1 pacid=42814196 polypeptide=Potri.017G086500.1.p locus=Potri.017G086500 ID=Potri.017G086500.1.v4.1 annot-version=v4.1 MAVSSCPCPKLFVASSFECRSDSSSSADQPSQGRSNSARHGTTPFLSGAGMSSLILKFPPNFVRQLSTKARRNCSNIGVAQIVAASWSNNSAAGAPSAAA AAAAAAAASAIPAAEPAKTLAGNEVVGIDSSDNKNVSVVQLEDLSSDLEYKSFLSSDGSIAVHAGERLGRGIVTDAITTPVVNTSAYFFKKTQELIDFKE KRHASYEYGRYGNPTTQVLEDKISELEGAESTLILASGMCASTVLLLALVPAGGHLVTTTDCYRKTRIFMETFLPKMGITVTVIDPADVKALESALEINK VSLFFTESPTNPFLRCVDIELVSELCHRKGALVCIDGTFATPLNQKALALGADLILHSATKFIGGHNDVLGGCISGSTKVVSEIRNLHHVLGGTLNPNAA YLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVRCVYYPGLPSHPEHHIAKKQMTGFGGVVSFEVDGDLFITSKFVDALKIPYIAPSFGGCESIVDQPA IMSYWDLSRSEREKYGIKDNLVRFSFGVEDFEDLKADILQALETIESA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01120		AtCGS1, ATCYS1,...	METHIONINE OVERACCUMULATION 1,...		Potri.017G086500 [exp]	0	1	CGS1.1
AT3G61610			Galactose mutarotase-like supe...		Potri.002G167200 [exp]	6.63	0.6366
AT1G71940			SNARE associated Golgi protein...		Potri.019G083500 [exp]	11.61	0.6426
AT5G36170		ATPRFB, HCF109	high chlorophyll fluorescent 1...		Potri.008G075800 [exp]	18.33	0.5856
AT1G72430			SAUR-like auxin-responsive pro...		Potri.001G164300 [exp]	23.81	0.5824
AT5G28850			Calcium-binding EF-hand family...		Potri.013G047300 [exp]	25.82	0.5764
AT4G30310			FGGY family of carbohydrate ki...		Potri.018G095700 [exp]	27.74	0.6030
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Potri.010G253200 [exp]	32.86	0.6025	DWF5.2
AT3G53230			ATPase, AAA-type, CDC48 protei...		Potri.016G091600 [exp]	35.15	0.5976	Pt-CDC48.2
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Potri.008G054600 [exp]	36.63	0.5978	HSP70.4
AT1G53120			RNA-binding S4 domain-containi...		Potri.011G119800 [exp]	41.23	0.5844

Compare expression of checked genes

Potri.017G086500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.