Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15330 336 / 2e-115 ATSPX4 ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX domain gene 4 (.1) AT5G20150 171 / 1e-51 ATSPX1 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) AT2G26660 166 / 3e-49 ATSPX2 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) AT2G45130 159 / 2e-47 ATSPX3 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) AT3G23430 45 / 6e-05 PHO1, ATPHO1 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G061400 [exp] 180 / 4e-55 AT2G45130 269 / 4e-91 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.002G143900 [exp] 179 / 6e-55 AT2G45130 276 / 1e-93 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.018G131500 [exp] 170 / 1e-50 AT5G20150 356 / 1e-124 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.006G069500 [exp] 170 / 1e-50 AT5G20150 359 / 8e-126 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.018G028200 [exp] 163 / 3e-48 AT2G26660 321 / 2e-110 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Potri.006G253400 [exp] 155 / 6e-45 AT5G20150 308 / 1e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.001G193200 [exp] 119 / 2e-32 AT5G20150 158 / 2e-48 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.001G135950 [exp] 74 / 4e-16 AT2G45130 121 / 7e-35 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.010G069000 [exp] 43 / 0.0002 AT3G23430 1069 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030095 [exp] 169 / 2e-50 AT5G20150 356 / 8e-125 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10043272 [exp] 168 / 5e-50 AT5G20150 343 / 8e-120 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10002908 [exp] 161 / 2e-47 AT2G26660 309 / 1e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Lus10002018 [exp] 156 / 1e-45 AT2G26660 308 / 2e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Lus10019415 [exp] 155 / 2e-43 AT5G20150 326 / 2e-110 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03105 [poplar] [flax] SPX SPX domain
Representative CDS sequence Show only first row Show all	>Potri.017G086600.1 pacid=42813008 polypeptide=Potri.017G086600.1.p locus=Potri.017G086600 ID=Potri.017G086600.1.v4.1 annot-version=v4.1 ATGAAGTTTGGAAAAGAATTCAAGACCCACCTAGAAGAAACCCTTCCTGAGTGGAGGGACAAGTTTCTCTGCTACAAGCCCCTCAAGAAACTCCTCAAAC AATTACCTCCCACCGTTGATTCTCTCAACCTTGATCGCCCCGTTAATTTTCAACTCCATCCACACCCTCCTCCGCTCACTGGTGATGTTCATGGTAATAC TAATAGGCCTTTGGTGGATTTGCAAGAATGGTTTGTTAGAATTCTTAATGAAGAGCTTGACAAGTTCAATGATTTCTATGTTGATAAAGAAGAAGACTTT GTTATACGCCTTCAGGAGCTGAAGGAAAGAATTGAAAGTCTAAAGGAAAAGAGCAGCAAGGATGGAGTTTTTACATCAGAGAGTGAATTTAGTGAAGAAA TGATGGATATTCGTAAAGACTTGGTCACCATTCATGGAGAGATGGTGCTTCTAAAAAATTATAGCTCCTTAAATTTTGCAGGGTTAGTGAAGATTTTGAA GAAGTATGATAAAAGGACAGGAGGATTGTTGCGCTTACCTTTCACACAACTTGCCCTTCATCAGCCTTTTTTCACAACAGAGCCTCTGACAAGGTTGGTC CATGAATGCGAGGATAATCTTGAGCTCCTTTTTCCACTGGAGGCAGAAGTCATTGAATCGACCAACATCGTACAAGATCAATCAAATCCATCTCTGAATA ACACAACAAATATCTCACCTGGGCCTCCGACAACACTCGGGGAGGAAACCATCGACATATATCGCAGCACCCTTGCAGCCATGAAAGCCATACGAGGCCT TCAAAAGGCAAGCTCCACCTCCAATCCACTATCATTTTCATCTTTCTTCATGATCCAGGATGATGAAAGTACTGGTGCTGTAACAGCTGCAAACTCAACT TCAAACTCTTCAGCCACAACGCATGATGGAGAGGAGATTGATCAAGAAGATGTGCATTCTGTTTAA
AA sequence Show only first row Show all	>Potri.017G086600.1 pacid=42813008 polypeptide=Potri.017G086600.1.p locus=Potri.017G086600 ID=Potri.017G086600.1.v4.1 annot-version=v4.1 MKFGKEFKTHLEETLPEWRDKFLCYKPLKKLLKQLPPTVDSLNLDRPVNFQLHPHPPPLTGDVHGNTNRPLVDLQEWFVRILNEELDKFNDFYVDKEEDF VIRLQELKERIESLKEKSSKDGVFTSESEFSEEMMDIRKDLVTIHGEMVLLKNYSSLNFAGLVKILKKYDKRTGGLLRLPFTQLALHQPFFTTEPLTRLV HECEDNLELLFPLEAEVIESTNIVQDQSNPSLNNTTNISPGPPTTLGEETIDIYRSTLAAMKAIRGLQKASSTSNPLSFSSFFMIQDDESTGAVTAANST SNSSATTHDGEEIDQEDVHSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15330		ATSPX4	ARABIDOPSIS THALIANA SPX DOMAI...		Potri.017G086600 [exp]	0	1
AT3G54000			unknown protein		Potri.006G093000 [exp]	1.73	0.8938
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Potri.006G203200 [exp]	2.44	0.8889
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Potri.006G203000 [exp]	5.65	0.8887
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Potri.008G064400 [exp]	6.00	0.8871	COI1.2
AT1G27680		APL2	ADPGLC-PPase large subunit (.1...		Potri.005G229700 [exp]	7.07	0.8567
AT2G04880	WRKY	ATWRKY1, ZAP1	zinc-dependent activator prote...		Potri.014G164300 [exp]	14.38	0.8704
AT5G24470		APRR5	pseudo-response regulator 5 (....		Potri.015G002300 [exp]	15.71	0.8613	APRR5.3,PtpRR3
AT5G58870		FTSH9	FTSH protease 9 (.1)		Potri.001G249100 [exp]	15.93	0.8910
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Potri.001G216600 [exp]	21.65	0.8305
AT2G29670			Tetratricopeptide repeat (TPR)...		Potri.009G044200 [exp]	21.84	0.8374

Compare expression of checked genes

Potri.017G086600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.