Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29060 852 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G14040 805 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03240 792 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03260 780 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G35350 770 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G26730 769 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G69480 734 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03250 726 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT4G25350 699 / 0 SHB1 SHORT HYPOCOTYL UNDER BLUE1, EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G23430 418 / 8e-135 PHO1, ATPHO1 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G090400 [exp] 853 / 0 AT1G14040 1037 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165800 [exp] 825 / 0 AT1G14040 1032 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165300 [exp] 825 / 0 AT1G14040 1022 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G164900 [exp] 820 / 0 AT1G14040 992 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.016G032900 [exp] 790 / 0 AT1G14040 865 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G090300 [exp] 619 / 0 AT1G69480 831 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G069000 [exp] 427 / 2e-138 AT3G23430 1069 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.008G169400 [exp] 420 / 1e-135 AT3G23430 1019 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.008G110800 [exp] 403 / 9e-129 AT1G68740 1096 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030439 [exp] 848 / 0 AT1G14040 1127 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10037147 [exp] 844 / 0 AT1G14040 1071 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10036779 [exp] 843 / 0 AT1G14040 1080 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030440 [exp] 801 / 0 AT1G14040 1048 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10026623 [exp] 789 / 0 AT1G14040 1058 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030438 [exp] 728 / 0 AT1G14040 976 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10019230 [exp] 498 / 3e-168 AT1G69480 676 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10000203 [exp] 470 / 2e-159 AT1G14040 610 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10021164 [exp] 453 / 4e-148 AT3G23430 1066 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Lus10011799 [exp] 439 / 6e-143 AT3G23430 1080 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0182 [poplar] [flax] IT PF03124 [poplar] [flax] EXS EXS family
Representative CDS sequence Show only first row Show all	>Potri.017G086800.2 pacid=42813488 polypeptide=Potri.017G086800.2.p locus=Potri.017G086800 ID=Potri.017G086800.2.v4.1 annot-version=v4.1 ATGAAGTTTGGGAAAGAATTTGCAGCACAGATGGTGCAAGAATGGCAGGAAGCATACATGAACTACAACCATCTCAAAACAATCTTGAAAGATGTCTTGC GTTTTAGAACGCTAAGAGGCGCACCGTCAACTGTGGCAGCAGCAACCTCACATGGTTCTTTGAAGAGAAGGGTATCACTCTATAGAGCATTTAGTGGCCT AACAGGCCGGTATAGAGGCTCACCAAGAAAGAGTGAAGATGAAGTGATACTAGTAAGTGCAGTACAAGAAAATGGAGGAGATGAGCATTACCAGACCTTG TTTCTCAATGCATCAGATGAAGGAGGAGAGTATGAGCTTGTGTTCTTTAGGAGTCTTGATGGCGAGTTTAACAAGGTAATCAACTTTTATAAGAAAAAAG TAGAGGAAGTGATGGGAGAGGCAGATGATTTGAGTAAGCAAATGGATGCTTTGATTGCGCTAAGGATCAGGGTGGATGATCCGGTTGTTGGTGGGTCTAA TATTGCGAATCTTGCCGTCCCTGGTTTCTCCTCAGTGTCCGCATCGGTTGTCCATCCTCCCATCAACAACAGGAACCCAGGATGGACATGTATGGAGGTG ATTAAAGAAGTTGAGATGAGCGCAGAAGCAAATTCAGAGGATAGTAACAAAGGGACCAACAATGAGAATTCCAATAGCCAGAGGAAAACCAATGGATACA AGAAAGATATGAAGACCTTCAAACCGGCTTCGTTAGAAGTTCTGGATCATGTTAAGATCAATGTTGAGCCTGAAACTCCGGTGTCCACAGTAAAGAATGT CATCTCAAGTTCAAAATCAGACTTGTCGTACAGCAAGGAAGAGCTGAGGAAGGCAGAAGAACTTATGACTCATGCTTTTGTCGAATTCTACAGAAAGCTT CGACTTCTAAAAAGTTACTGCTTCTTGAACCAATTAGCATTCTCCAAGATAATGAAAAAATATGACAAGATCACTATGCGAAATGCATCCAAGTCTTACT TGAATATGGTGGACGATTCTTATCTTGGCAGCTCTGATGAGGTTACTAAGCTCATGGAAAGAGTGGAGGCAACCTTCATCAAGCATTTTTCAAATGGGAA TCATAGAAAAGGAATGAACACTTTAAGACCAAAGCCTAAAAAGGAAAGACATAGAATTACATTTTCAATGGGTTTCTTCACAGGCTGCTCAGCAGCGCTT TTGATAGCACTCGTTGTGCTTATACATGCCAGGGATATCCTCAATAGTGAAGGAGGTCCTCAATATATGGACAACATATTTCCACTTTACTCATTGTTTG GATTCGTTGTCCTGCATATGCTCATGTATGCTGCTGATATATACTTCTGGAAGCGTTATCGGATCAATTATGCGTTCATATTTGGGTTTAAGCAAGGAAC AGAACTGGGCTATAGAGAAGTCCTCCTCCTTGCTTCAGGTCTTTCAGTGCTTGCATTGGGTGGTGTCCTCTCAAATTTGGATATGGAGATGGACCCAAGA ACAAAAAGCTTCACAGCAATTACTGAATTGATTCCTCTGGCCTTGCTCACTCTTGTGCTTGTCATCATATTCTGTCCTTTCAATATCATATATCGATCGA GTCGGTACTTTCTGATCCAATGTGCTTTGCACTGTCTTTTCGCTCCTCTTTACAAGGTTACCCTGCCAGATTTCTTCTTGGCCGATCAGCTTACCAGTCA GGTACAAGCTCTCAGGAATTTGGAGTTTTACATTTGCTACTATGGTTGGGGAGACTTCACAACGAGGACGAACACATGTAGTGGAAGTAAAGTTTTTGAA AGCTTCTACTTCGTTGTAGCACTGATTCCATATTGGTTTCGGTTCCTTCAGTGCCTTCGCCGCCTGTTTGAAGAGAAAGACTCAGGGCAGGCATACAATG GACTAAAATACTTTTTAATAATTATCGCTGTGGCCGCGAGAACAGCATATGATTTGAGAGTGGGAATGACTTTGAAGATATTTGCTGCAGCCACTTCAGG TGCTGCAACGATTATGGCTACATATTGGGACATTGTAGTTGACTGGGGACTTCTTCAGCGAGATTCAAGAAACCCATGGCTGAGAGATAAACTTGTTATT CCTAACAGAAGTGTTTACTTTGTAGCAATGGTGCTGAATGTTGTCTTAAGACTTGCATGGATGCAGACAGTGTTAGGTTTTAGACAAACACCTTTCTTGC ACAGAAAAGCCTTGACAGCAATTGTTGCATGCTTGGAGATAATACGCCGTGGCATTTGGAATTTCTTCAGGCTGGAGAATGAGCACTTGAACAACGTCGG CAAATATCGGGCATTTAAGTCGGTACCCCTGCCTTTTCACTACGAAGACAAACGTGTATAA
AA sequence Show only first row Show all	>Potri.017G086800.2 pacid=42813488 polypeptide=Potri.017G086800.2.p locus=Potri.017G086800 ID=Potri.017G086800.2.v4.1 annot-version=v4.1 MKFGKEFAAQMVQEWQEAYMNYNHLKTILKDVLRFRTLRGAPSTVAAATSHGSLKRRVSLYRAFSGLTGRYRGSPRKSEDEVILVSAVQENGGDEHYQTL FLNASDEGGEYELVFFRSLDGEFNKVINFYKKKVEEVMGEADDLSKQMDALIALRIRVDDPVVGGSNIANLAVPGFSSVSASVVHPPINNRNPGWTCMEV IKEVEMSAEANSEDSNKGTNNENSNSQRKTNGYKKDMKTFKPASLEVLDHVKINVEPETPVSTVKNVISSSKSDLSYSKEELRKAEELMTHAFVEFYRKL RLLKSYCFLNQLAFSKIMKKYDKITMRNASKSYLNMVDDSYLGSSDEVTKLMERVEATFIKHFSNGNHRKGMNTLRPKPKKERHRITFSMGFFTGCSAAL LIALVVLIHARDILNSEGGPQYMDNIFPLYSLFGFVVLHMLMYAADIYFWKRYRINYAFIFGFKQGTELGYREVLLLASGLSVLALGGVLSNLDMEMDPR TKSFTAITELIPLALLTLVLVIIFCPFNIIYRSSRYFLIQCALHCLFAPLYKVTLPDFFLADQLTSQVQALRNLEFYICYYGWGDFTTRTNTCSGSKVFE SFYFVVALIPYWFRFLQCLRRLFEEKDSGQAYNGLKYFLIIIAVAARTAYDLRVGMTLKIFAAATSGAATIMATYWDIVVDWGLLQRDSRNPWLRDKLVI PNRSVYFVAMVLNVVLRLAWMQTVLGFRQTPFLHRKALTAIVACLEIIRRGIWNFFRLENEHLNNVGKYRAFKSVPLPFHYEDKRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G29060			EXS (ERD1/XPR1/SYG1) family pr...		Potri.017G086800 [exp]	0	1
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Potri.008G008700 [exp]	4.00	0.7382
AT3G16340		ABCG29, ATPDR1,...	ATP-binding cassette G29, plei...		Potri.003G049600 [exp]	6.48	0.6959
AT5G06740			Concanavalin A-like lectin pro...		Potri.001G455500 [exp]	6.70	0.7336
AT1G31930		XLG3	extra-large GTP-binding protei...		Potri.019G130200 [exp]	8.06	0.7003
AT1G15890			Disease resistance protein (CC...		Potri.001G172300 [exp]	9.59	0.7335
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.010G054100 [exp]	13.41	0.6752
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Potri.012G015100 [exp]	16.06	0.7386
AT1G09090		ATRBOHB-BETA, A...	respiratory burst oxidase homo...		Potri.005G026200 [exp]	16.15	0.6416
AT4G23740			Leucine-rich repeat protein ki...		Potri.012G033200 [exp]	25.92	0.6484
AT1G50600	GRAS	SCL5	scarecrow-like 5 (.1)		Potri.001G361700 [exp]	27.12	0.6757

Compare expression of checked genes

Potri.017G086800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.