Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66520 336 / 4e-109 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G42920 320 / 1e-103 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G56310 313 / 2e-101 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G08510 309 / 5e-100 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G20540 308 / 3e-99 MEF21 mitochondrial editing factor 21 (.1) AT1G74630 310 / 4e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18840 303 / 2e-97 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G15300 303 / 3e-97 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G48910 298 / 2e-94 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G15930 297 / 2e-93 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G086100 [exp] 332 / 2e-108 AT5G15300 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G065500 [exp] 330 / 5e-107 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G110800 [exp] 328 / 5e-107 AT5G61800 554 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G369900 [exp] 330 / 6e-107 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G175900 [exp] 324 / 6e-106 AT5G08510 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G231200 [exp] 326 / 1e-105 AT5G66520 504 / 1e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G202600 [exp] 323 / 3e-105 AT2G42920 660 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.018G035900 [exp] 323 / 3e-105 AT2G20540 709 / 0.0 mitochondrial editing factor 21 (.1) Potri.015G034900 [exp] 317 / 3e-103 AT4G21065 370 / 2e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026006 [exp] 325 / 6e-105 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030125 [exp] 318 / 7e-104 AT2G20540 618 / 0.0 mitochondrial editing factor 21 (.1) Lus10014298 [exp] 321 / 4e-103 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 318 / 2e-102 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005987 [exp] 312 / 2e-101 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019797 [exp] 312 / 4e-100 AT3G29230 768 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015718 [exp] 303 / 6e-97 AT5G66520 357 / 6e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014113 [exp] 304 / 8e-97 AT3G29230 767 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007341 [exp] 299 / 8e-96 AT2G42920 610 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10024222 [exp] 300 / 1e-95 AT1G74630 719 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.017G087000.1 pacid=42813629 polypeptide=Potri.017G087000.1.p locus=Potri.017G087000 ID=Potri.017G087000.1.v4.1 annot-version=v4.1 ATGCACCCGCCAAGCAACCAACAATGCAAGCCTATACTCACCCTGGCGTCCACTCTTATTTCCATGGCAGAGGCTTGCAACTCTATGTCCCGCCTCAAGC AGATCCACGCCCATTCCTTACTCACAGGCCTCCACGACCACTCCATTATCCTTGCCAAGATGCTTCGCTTTGCTGCGGTTTCACCTTCCGGTGATTTAGC CTACGCTCAGCGTCTGTTTGATCAATTGCCCCATCCAAATACTTTCTTCTATAACACCCTCATTCGTGGCTACGCTAAAAGCTCTATCCCTTCTTATTCC TTGCATTTAGTTAATCAGATGAGGCAAAATGGTGTAGACCCAGATGAATTCACTTTCAATTTCTTGATAAAAGCGCGGTCAAGAGTGAGAGTGAATATAA ACCGTAACCTCCCATTGGTCGTAGAGTGCGATGAGATACACGGGGCCGTGCTAAAGCTTGGGTTTTCTTCGCATTTGTTTGTTCGAAATGCGTTGATACA TTTGTATGCGGCGAGGGGGAATCCCGTGGTAGCCTGGAGAGTGTTTGATGAGACGGTGGGAGTGGACGTTGTCTCGTGGTCGGGTTTGGTTTTAGCTCAT GTAAGGGCTGGGGAATTAGAGCGTGCAAGATGGGTTTTTGATCAGATGCCAGAGAGGGATGTTGTTTCTTGGACAACTATGGTTTCTGCGTATTCGCAAG CTAAGTATTCGAGGGAGGCATTAGAGTTGTATGTGACTATGCTAGATAAAGGAGTGAGACCAGATGAGGTCACTCTTGTTAGTGTGATTTCAGCATGCAC TAATTTGGGTGATTTGCAAATGGGGTATAGTGTGCATTCTTATATTGATGAGAATGGGTTTCGATGGATGGTTTCACTTTGTAATGCATTGATCGATATG TATGCAAAGTGTGGATGTATGGATAGAGCGTGGCAGGTGTTCAATAGCATGAGCAGGAAGAGTCTGGTTACATGGAATTCAATGATTTCTGCATGTGCTA ACAACAGGAACCCAGAAGATGCATTCGGGTTATTTAGTCGCATGTTTAATTACGGGGTTGCACCTGATGGGGTTACTTTCTTAGCTGTTTTAACTGCATA CGCACATGTGGGGTTGGTAGATGAAGGGTACAGGCTTTTTGAGAGTATGCAGAGAGACCATGGAATTGAGGCAAGGATTGAACATTACGGTTGCGTGGTA AATATGTTAGGTCAAGCAGGGTGGTTAGAGGAGGCATTTGAATTAATTACCAGCATGCCATTACCAAGCAATGACGTTGTTTGGGGAGTTTTGCTTGCAG CCTGTAGAAAACATGGCGATGTGTATATGGGGGAGAGGGTTGTGAAGAAGCTATTAGAGTTAAAACTAGATGGAGGGTACTATACTTCATGA
AA sequence Show only first row Show all	>Potri.017G087000.1 pacid=42813629 polypeptide=Potri.017G087000.1.p locus=Potri.017G087000 ID=Potri.017G087000.1.v4.1 annot-version=v4.1 MHPPSNQQCKPILTLASTLISMAEACNSMSRLKQIHAHSLLTGLHDHSIILAKMLRFAAVSPSGDLAYAQRLFDQLPHPNTFFYNTLIRGYAKSSIPSYS LHLVNQMRQNGVDPDEFTFNFLIKARSRVRVNINRNLPLVVECDEIHGAVLKLGFSSHLFVRNALIHLYAARGNPVVAWRVFDETVGVDVVSWSGLVLAH VRAGELERARWVFDQMPERDVVSWTTMVSAYSQAKYSREALELYVTMLDKGVRPDEVTLVSVISACTNLGDLQMGYSVHSYIDENGFRWMVSLCNALIDM YAKCGCMDRAWQVFNSMSRKSLVTWNSMISACANNRNPEDAFGLFSRMFNYGVAPDGVTFLAVLTAYAHVGLVDEGYRLFESMQRDHGIEARIEHYGCVV NMLGQAGWLEEAFELITSMPLPSNDVVWGVLLAACRKHGDVYMGERVVKKLLELKLDGGYYTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.017G087000 [exp]	0	1
AT1G06440			Ubiquitin carboxyl-terminal hy...		Potri.002G245100 [exp]	3.60	0.9252
AT5G13270		RARE1	REQUIRED FOR ACCD RNA EDITING ...		Potri.001G066100 [exp]	6.00	0.9236
AT1G72040			P-loop containing nucleoside t...		Potri.013G109400 [exp]	7.41	0.9157
AT1G06440			Ubiquitin carboxyl-terminal hy...		Potri.002G244900 [exp]	8.48	0.9173
AT2G15690			Tetratricopeptide repeat (TPR)...		Potri.003G058300 [exp]	8.94	0.9250
AT1G77405			Pentatricopeptide repeat (PPR)...		Potri.002G080300 [exp]	11.31	0.9076
AT4G24320			Ubiquitin carboxyl-terminal hy...		Potri.004G223200 [exp]	12.48	0.8844
AT5G40160		EMB139, EMB506	embryo defective 506, EMBRYO D...		Potri.001G295200 [exp]	14.07	0.9051
AT1G55000			peptidoglycan-binding LysM dom...		Potri.005G032100 [exp]	17.43	0.8969
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.019G127000 [exp]	17.66	0.9122

Compare expression of checked genes

Potri.017G087000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.