Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39570 113 / 2e-27 unknown protein AT3G29075 91 / 3e-20 glycine-rich protein (.1) AT1G11440 50 / 1e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G127400 [exp] 300 / 8e-98 AT5G39570 139 / 4e-37 unknown protein Potri.004G029500 [exp] 46 / 2e-05 AT1G11440 68 / 2e-13 unknown protein Potri.011G032700 [exp] 44 / 0.0001 AT1G11440 71 / 1e-13 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029322 [exp] 134 / 6e-36 AT5G39570 144 / 2e-40 unknown protein Lus10016220 [exp] 81 / 4e-16 AT5G39570 82 / 7e-17 unknown protein Lus10018397 [exp] 47 / 2e-05 AT1G11440 98 / 2e-23 unknown protein Lus10007616 [exp] 47 / 2e-05 AT1G11440 100 / 2e-24 unknown protein Lus10017294 [exp] 45 / 5e-05 ND 39 / 0.001 Lus10010622 [exp] 43 / 9e-05 ND 39 / 4e-04
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G087200.1 pacid=42813657 polypeptide=Potri.017G087200.1.p locus=Potri.017G087200 ID=Potri.017G087200.1.v4.1 annot-version=v4.1 ATGTCGTACTACTCACGAGGACAGGATGACCAAGTCGACGATTACGATGAGTACGATCCCACCCCATACGGTGGCGGTTACGACATTGCTTTAACTTATG GTCGGCCAATCCCACCGTCCGATGATACCTGCCATCCAATCAGCTCTTCCTCACCGTCCGACGAGATCGACTACGATCGTCCCAATTACTCCTCACATTC TGAGCCGTCTCCTTACGCTGATGAAGCTCTTGAAACAGAGTACAGCAGCTACTCCCGTCCCAAGCCTCGACCTGGATCCAGTTATGGTGGGCCTCAACCG GCTTATGGATTGCAGCCCGGATCGGAGTATGGGTCTGCTGGGTATGAGAAGCCGGCTAGTGAGGAGCATGGCTCTAGCTATGAGTCTGCTGGGTATGGCA AGCCTCATAGTGAGGAATATGGGTCTGGTGGCTATGAGAAACCTAGCGAGTATGGATCCGGGTATGGGAGGAGACCCGAGTACGAAGATGGATCTGGCTA TGAGAAGCCGAGCAAGCATGGGTCTGGTTATGGGCGTAAACAAGAATCGGATTACGGGTCTGGCTATGAGAGACCTCAGAGTGAGGAATATGGATCTGGG TATAGCAGGAGACCCGAAGCTGAATATGGTTCTGGATATGAGAAGCCAAGTGAGTACAGTTCGGGTTATGGGAGGAATCCCGAATCTGAATACGGGTCTG GGTACGAGAAGTCCAGCGAACATGAAGAGAGGACTGAGACGGGGTACGGATCCGGGCATGGGAGGAGGCCAGGGTCCGAATATGAAGAAGATGGGTCGGA GCATGTGTCTGGGTATGGCAGGAAGCAGAGTTACGAGGAAGAGGGAGAAGGGTATGGAGGAAGGAGCCAACATGAGAAGCCAAGTAGTGGAGATGATTCA CCTAAGAGGGTTAGCTATGAAGGAGCCAACATGAGGAGGCCAGGGTCCGAATATGAAGAAGGTGGGTCGGAGCATGTGTCTGGGTATGGCAGGAAGCAGA GTTACGAGGAAGAGGGAGAAGGGTATGGAGGAAGGAGCCAACATAAGCCAAGTAGTGGAGATGATTCACCTAAGAGGGTTAGCTATGAAGGAGCCAACAT GAGGAGGCCAGGGTCCGAATATGAAGAAGGTGGGTCGGAGCATGTTTCTGGGTATGGTAGGAAGCAGAGTTACGTGGAAGAGGGAGAAGGGTATGGAGGA AGGAGCCATCATGAGAAGCCAAGTTATGGAGATGATTCACCTAAGAGGGTTAGCCATGAAGGAGGAGATTATGAGAGGCCTTCTTATGGGAGTCGCCGCA GTGATGACGACGACGAGGATCGTAATAAGTATCGTGATGGTGATGAAGAGGGCTATGGACGCGGGAAATATGGAGATAACAATTCTGATGATGACGGGGA GAAGCATCACCGCCGCCAGAGCTACGATGATGAGTGA
AA sequence Show only first row Show all	>Potri.017G087200.1 pacid=42813657 polypeptide=Potri.017G087200.1.p locus=Potri.017G087200 ID=Potri.017G087200.1.v4.1 annot-version=v4.1 MSYYSRGQDDQVDDYDEYDPTPYGGGYDIALTYGRPIPPSDDTCHPISSSSPSDEIDYDRPNYSSHSEPSPYADEALETEYSSYSRPKPRPGSSYGGPQP AYGLQPGSEYGSAGYEKPASEEHGSSYESAGYGKPHSEEYGSGGYEKPSEYGSGYGRRPEYEDGSGYEKPSKHGSGYGRKQESDYGSGYERPQSEEYGSG YSRRPEAEYGSGYEKPSEYSSGYGRNPESEYGSGYEKSSEHEERTETGYGSGHGRRPGSEYEEDGSEHVSGYGRKQSYEEEGEGYGGRSQHEKPSSGDDS PKRVSYEGANMRRPGSEYEEGGSEHVSGYGRKQSYEEEGEGYGGRSQHKPSSGDDSPKRVSYEGANMRRPGSEYEEGGSEHVSGYGRKQSYVEEGEGYGG RSHHEKPSYGDDSPKRVSHEGGDYERPSYGSRRSDDDDEDRNKYRDGDEEGYGRGKYGDNNSDDDGEKHHRRQSYDDE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39570			unknown protein		Potri.017G087200 [exp]	0	1
AT2G29210			splicing factor PWI domain-con...		Potri.001G244600 [exp]	3.16	0.8078
AT5G63550			DEK domain-containing chromati...		Potri.012G102500 [exp]	3.31	0.8239
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Potri.010G068400 [exp]	9.94	0.8115
AT5G09860		AtTHO1, AtHPR1	nuclear matrix protein-related...		Potri.003G194000 [exp]	10.00	0.7994
AT2G45460	FHA		SMAD/FHA domain-containing pro...		Potri.014G071400 [exp]	13.34	0.8203
AT5G42940			RING/U-box superfamily protein...		Potri.002G124300 [exp]	18.16	0.8058
AT1G77180		SKIP	chromatin protein family (.1.2...		Potri.018G086100 [exp]	22.60	0.8053
AT3G22170	FAR1_related	FHY3	far-red elongated hypocotyls 3...		Potri.016G018300 [exp]	23.15	0.8000	Pt-FHY3.1
AT1G61660	bHLH	bHLH112	basic helix-loop-helix (bHLH) ...		Potri.011G033000 [exp]	25.09	0.7998
AT5G65770		CRWN4, LINC4	CROWDED NUCLEI 4, little nucle...		Potri.012G034300 [exp]	25.92	0.7985

Compare expression of checked genes

Potri.017G087200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.