Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39530 301 / 8e-104 Protein of unknown function (DUF1997) (.1) AT5G39520 271 / 4e-92 Protein of unknown function (DUF1997) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024051 [exp] 313 / 4e-108 AT5G39530 283 / 9e-97 Protein of unknown function (DUF1997) (.1) Lus10041698 [exp] 306 / 8e-99 AT5G10240 976 / 0.0 asparagine synthetase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09366 [poplar] [flax] DUF1997 Protein of unknown function (DUF1997)
Representative CDS sequence Show only first row Show all	>Potri.017G087500.1 pacid=42814598 polypeptide=Potri.017G087500.1.p locus=Potri.017G087500 ID=Potri.017G087500.1.v4.1 annot-version=v4.1 ATGAGCGAAATTGCAGCAAGGTCCTTTGTCCCATGCCAGCACCAGGTGCTTGTTGGACATTTTAGCTCAAGGAAATGGAAAGAGAAGCTGAATAGGCATG AGCGGCAATGCCATGCACTGCCTGAACCAAAATCAAAGCAGCCTTTGATCAAGAATCAGATGGCAATGAATTCTGCCACCTACTCTTCAAGAATGACTAC TGATATCCCTCTCTATGAGTCTCCAGGGGCTTCCTTTGATGGATATTTGGAGGATAAGCCTAGAGTTTTCAGCGCCATATTTCCTGACAAAAGGAGGAGC CAACAACTTAATGAGGAAGAATGGAGAATTCAGATGTTGCCCATAAATTTCTTGTTCCTCACTGTCTGGCCAGTAGTTGAGATGAGATTGAGATGTAAAT CAGGAGGGAGAGATTACCCACCGGGAGTTCCTGAAGAGATCACGAAGGTTCTCGAGCTTGATGTTATCAGGTGGAAGCTTCAAGGACTTGATAATATTTT TCAACCATCTCAATTTTCTCTTGGTGTAAAAGGAGCATTATACCCTGATAGACAGGGAGTACGAACCAGGCTCAAAGGTCAACTAGAGATGAATATAAGC TTCGTTCTTCCTCCTGTGCTTGCTATGGTTCCTGAAAATGTTCGCCAGCCTGTTGCAGAGTCGGTATTAAGGGGACTGGTGGAGAACATGAAGCTTAGAG TTAATAGTAGCTTGCTCGCCGATTATAGCAAATTCAAGCAGGAGACACCTAAGAATCGGGTTTGA
AA sequence Show only first row Show all	>Potri.017G087500.1 pacid=42814598 polypeptide=Potri.017G087500.1.p locus=Potri.017G087500 ID=Potri.017G087500.1.v4.1 annot-version=v4.1 MSEIAARSFVPCQHQVLVGHFSSRKWKEKLNRHERQCHALPEPKSKQPLIKNQMAMNSATYSSRMTTDIPLYESPGASFDGYLEDKPRVFSAIFPDKRRS QQLNEEEWRIQMLPINFLFLTVWPVVEMRLRCKSGGRDYPPGVPEEITKVLELDVIRWKLQGLDNIFQPSQFSLGVKGALYPDRQGVRTRLKGQLEMNIS FVLPPVLAMVPENVRQPVAESVLRGLVENMKLRVNSSLLADYSKFKQETPKNRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39530			Protein of unknown function (D...		Potri.017G087500 [exp]	0	1
AT4G37760		SQE3	squalene epoxidase 3 (.1)		Potri.007G007600 [exp]	2.82	0.7822
AT4G27450			Aluminium induced protein with...		Potri.001G403000 [exp]	7.48	0.7659
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G070000 [exp]	12.72	0.7022
AT3G12600		ATNUDT16	nudix hydrolase homolog 16 (.1...		Potri.003G194900 [exp]	15.42	0.7029
AT3G52870			IQ calmodulin-binding motif fa...		Potri.016G034100 [exp]	22.44	0.7621
AT5G48960			HAD-superfamily hydrolase, sub...		Potri.010G002900 [exp]	26.72	0.7364
AT3G50660		PSC1, CYP90B1, ...	SUPPRESSOR OF NPH4 2, SHADE AV...		Potri.005G124000 [exp]	31.14	0.7489
AT1G44790			ChaC-like family protein (.1)		Potri.005G176300 [exp]	32.58	0.6599
AT5G07240		IQD24	IQ-domain 24 (.1)		Potri.015G142200 [exp]	34.91	0.6618
AT3G28760			unknown protein		Potri.017G080300 [exp]	37.94	0.6853

Compare expression of checked genes

Potri.017G087500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.