Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15340 754 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 506 / 2e-171 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37380 434 / 7e-145 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 419 / 1e-138 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G14820 418 / 2e-137 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 418 / 5e-137 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G06540 410 / 1e-135 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22690 409 / 3e-132 unknown protein AT5G66520 398 / 5e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G26782 399 / 1e-130 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G044700 [exp] 511 / 4e-173 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 486 / 1e-163 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G071800 [exp] 455 / 1e-151 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G012600 [exp] 439 / 3e-146 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G011000 [exp] 436 / 2e-143 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G237000 [exp] 430 / 3e-143 AT5G66520 544 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G083700 [exp] 436 / 1e-142 AT3G22690 1050 / 0.0 unknown protein Potri.016G065500 [exp] 427 / 2e-142 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G191200 [exp] 426 / 9e-142 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014653 [exp] 765 / 0 AT5G15340 634 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033775 [exp] 748 / 0 AT5G15340 635 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040680 [exp] 486 / 2e-163 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 480 / 4e-161 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 450 / 2e-150 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 444 / 6e-148 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 427 / 8e-142 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 422 / 7e-140 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031989 [exp] 424 / 2e-139 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 420 / 3e-139 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.017G087600.1 pacid=42813718 polypeptide=Potri.017G087600.1.p locus=Potri.017G087600 ID=Potri.017G087600.1.v4.1 annot-version=v4.1 ATGAAATGTTCAACCATCAACTTCACCACTCTCCAATCCCTCCCTGCCCGCTTCCGCTCTCTCCTCCGCTCTTGCGCCCGCAACTCCTCTCTTTCCACTG GCAAAAAACTCCACGCCGTTATCCTAACCTCCGGACTTGCTTCCTCATCCCCCAACACCTTCCTCCTCAACGCCCTCCACCACTTGTATGCCTCCTGCGG CGTTACATCCTCTGCACGCCACCTATTCTACCAAATCCCCCGCTCACATAAAGACGTTACAGATTGGACTACCCTGTTAACCTCCCTTGTTCAACACGGA ACCAAACCTTCTGAAGGGTTTTTTTTCTTCAAAGAAATGAGGAAGGAGGGTGTTGTTCTTGACGATGTTGCCATGATTTCTGTGTTTGTATTGTGCACGC GTGTGGAGGATTTAGGGATGGGAAGACAAGCGCAAGGGTGTCTTGTGAAGATGGGTTTGGGGCTTGGGGTTAAGGTGTGTAATGCTATAATGAACATGTA TGTGAAGTGTGGGTTAGTTGAGGAGGTGAGAAGAGTTTTTTGTGAAATGAATGAGCGGAATGTGGTTTCGTGGAGTACACTGTTGGAGGGAGTGGTGAAA TGGGAAGGGGTGGAGAATGGGAGAGTGGTGTTTGATGAGATGCCGGAGAGGAATGAGGTTGGTTGGACTATAATGATTGCAGGTTATGTGGGAAATGGGT TTTCTAGAGAAGGGTTTTTACTATTGGATGAAATGGTTTTGAGGTTCAGGTTAGGATTGAATTTTGTTACACTTTCTTCAATTTTATCTGCGTGTGCACA ATCAGGGGATGTCTTGATGGGGAGGTGGGTTCATGTTTATGCTTTGAAGGGAATGGGAAGGGAGATGCATATCATGGTGGGTACAGCTCTGGTGGACATG TATGCAAAATGTGGCCCGATAGATATGGCATTCAAAGTCTTCAAGTACCTACCAAAAAGGAATGTGGTGGCGTGGAATGCAATGCTTGGTGGGCTAGCGA TGCATGGAAGGGGTAAATTTGTGTTGGATATATTCCCAAAAATGATTGAAGAAGCTAAGCCAGATGATCTAACTTTTATGGCTGTCTTAAGTGCTTGCAG CCACTCAGGTTTAGTTGATCAAGGCTACCATTATTTTCGTAGTCTGGAATCAGAATATGGAACAACACCTAAGATTGAACACTATGCTTGTATGGTGGAT ATTCTAGGCCGGGCCGGTCATTTAGAAGAAGCTGTGATGTTGATAAAGAAGATGCCAATGTGTCCAAATGAGGTTGTTCTAGGATCCCTTTTGGGTTCTT GCAATGCCCATGGAAAGTTACAGCTTGGTGAGCGAATTCTGCAAGAGCTGATTCAGATGGATGGGCATAATACAGAATATCATGTATTGCTTTCGAACAT GTATGTTTTAGAAGGAAAGCAAGACAAGGCTAATTCACTCAGACAAATCCTTAAGAGTAAGGGTATTAGAAAGGTCCCTGGAGTGAGTTCTATTTATGTT GGTGGAAATATTCATCAGTTCAGTGCAGGGGATAAGTCACACCCACTGACAAAGGAAATTTATCATGCATTGAATAATATGATTCAAAGGTTGAGATTGG CTGGTTATGTACCCAATACTACTAACCAAGTTTTTCCAGGTTCTGATGGCAGGGAGGGTAGCAGTGAGGAGATGGAGGAGAAAGAGCAGGCATTGTTCTT GCACAGCGAAAAGCTGGCAGTCTGTTTTGGGCATATAAGCACAAAACCTGGTGCACCTCTTTATATATTCAAGAATCTACGCATATGCCAAGATTGTCAT TCTGCTATTAAAATTGTTTCTAAGATATACAACCGAGAAATTGTAATTAGAGATCGGAATCGTTTTCATTGTTTCAAGCATGGTTCATGTTCTTGCTCTG ATTATTGGTAA
AA sequence Show only first row Show all	>Potri.017G087600.1 pacid=42813718 polypeptide=Potri.017G087600.1.p locus=Potri.017G087600 ID=Potri.017G087600.1.v4.1 annot-version=v4.1 MKCSTINFTTLQSLPARFRSLLRSCARNSSLSTGKKLHAVILTSGLASSSPNTFLLNALHHLYASCGVTSSARHLFYQIPRSHKDVTDWTTLLTSLVQHG TKPSEGFFFFKEMRKEGVVLDDVAMISVFVLCTRVEDLGMGRQAQGCLVKMGLGLGVKVCNAIMNMYVKCGLVEEVRRVFCEMNERNVVSWSTLLEGVVK WEGVENGRVVFDEMPERNEVGWTIMIAGYVGNGFSREGFLLLDEMVLRFRLGLNFVTLSSILSACAQSGDVLMGRWVHVYALKGMGREMHIMVGTALVDM YAKCGPIDMAFKVFKYLPKRNVVAWNAMLGGLAMHGRGKFVLDIFPKMIEEAKPDDLTFMAVLSACSHSGLVDQGYHYFRSLESEYGTTPKIEHYACMVD ILGRAGHLEEAVMLIKKMPMCPNEVVLGSLLGSCNAHGKLQLGERILQELIQMDGHNTEYHVLLSNMYVLEGKQDKANSLRQILKSKGIRKVPGVSSIYV GGNIHQFSAGDKSHPLTKEIYHALNNMIQRLRLAGYVPNTTNQVFPGSDGREGSSEEMEEKEQALFLHSEKLAVCFGHISTKPGAPLYIFKNLRICQDCH SAIKIVSKIYNREIVIRDRNRFHCFKHGSCSCSDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15340			Pentatricopeptide repeat (PPR)...		Potri.017G087600 [exp]	0	1
AT1G71420			Tetratricopeptide repeat (TPR)...		Potri.013G098800 [exp]	7.74	0.8261
AT3G26540			Tetratricopeptide repeat (TPR)...		Potri.002G075300 [exp]	10.95	0.8046
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Potri.010G145150 [exp]	14.28	0.7992
AT5G52630		MEF1	mitochondrial RNAediting facto...		Potri.016G053500 [exp]	14.59	0.8030
AT5G01110			Tetratricopeptide repeat (TPR)...		Potri.014G052800 [exp]	16.88	0.7940
AT3G19510	HD	HAT3.1	Homeodomain-like protein with ...		Potri.009G093000 [exp]	16.91	0.7756
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Potri.013G006700 [exp]	17.66	0.7691
AT5G17270			Protein prenylyltransferase su...		Potri.004G080800 [exp]	18.33	0.7724
AT1G69290			Pentatricopeptide repeat (PPR)...		Potri.008G095800 [exp]	23.23	0.7637
AT1G43980			Tetratricopeptide repeat (TPR)...		Potri.005G185300 [exp]	25.21	0.7294

Compare expression of checked genes

Potri.017G087600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.