Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01090 880 / 0 AKIN10, SnRK1.1 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) AT3G29160 813 / 0 ATKIN11, AKIN11, SnRK1.2 SNF1-RELATED PROTEIN KINASE 1.2, SNF1 kinase homolog 11 (.1.2.3) AT5G39440 644 / 0 SnRK1.3 SNF1-related protein kinase 1.3 (.1) AT4G24400 291 / 2e-93 ATCIPK8, PKS11, CIPK8, SnRK3.13 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) AT2G26980 288 / 4e-93 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) AT5G21326 288 / 3e-92 Ca2+regulated serine-threonine protein kinase family protein (.1) AT3G17510 283 / 5e-90 CIPK1, SnRK3.16 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2) AT1G01140 279 / 1e-88 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT1G30270 274 / 2e-86 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT5G25110 269 / 3e-84 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G115900 [exp] 987 / 0 AT3G01090 879 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Potri.013G090800 [exp] 742 / 0 AT3G01090 728 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Potri.001G222600 [exp] 288 / 2e-92 AT2G26980 752 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.010G002500 [exp] 284 / 2e-90 AT3G17510 631 / 0.0 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2) Potri.009G021000 [exp] 281 / 2e-89 AT2G26980 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.014G104200 [exp] 279 / 2e-88 AT1G01140 688 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.006G062800 [exp] 278 / 7e-88 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.002G177900 [exp] 276 / 1e-87 AT1G01140 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.018G096042 [exp] 273 / 5e-86 AT5G57630 535 / 0.0 SNF1-RELATED PROTEIN KINASE 3.4, CBL-interacting protein kinase 21 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001290 [exp] 929 / 0 AT3G01090 931 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10035801 [exp] 926 / 0 AT3G01090 920 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10012696 [exp] 898 / 0 AT3G01090 905 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10036582 [exp] 878 / 0 AT3G01090 834 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10028115 [exp] 281 / 3e-89 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10042816 [exp] 280 / 1e-88 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10030210 [exp] 275 / 3e-87 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10019411 [exp] 269 / 9e-85 AT5G35410 729 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10002692 [exp] 266 / 2e-83 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10024448 [exp] 266 / 3e-83 AT5G25110 654 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [poplar] [flax] UBA PF00627 [poplar] [flax] UBA UBA/TS-N domain CL0573 [poplar] [flax] KA1-like PF02149 [poplar] [flax] KA1 Kinase associated domain 1 CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.017G087900.1 pacid=42813501 polypeptide=Potri.017G087900.1.p locus=Potri.017G087900 ID=Potri.017G087900.1.v4.1 annot-version=v4.1 ATGGAAGGGCCATCTCACAGAGGCAGCAGTGGTGTGGATATGTATTTACCAAATTACAAGCTTGGTAAAACTCTTGGAATCGGTTCCTTTGGAAAGGTAA AAATAGCAGAGCATGCATTGACTGGGCACAAAGTTGCTGTCAAGATACTTAACCGTCGTAAGATAAAAAACATGGAGATGGAAGAAAAAGTGAGAAGAGA AATCAAAATCTTGAGATTGTTTATGCATCCCCACATTATACGACTTTATGAGGTTATAGAAACACCAACTGACATATATGTTGTCATGGAGTATGTGAAG TCTGGGGAGCTCTTTGATTATATTGTGGAGAAGGGTAGATTGCAGGAAGATGAAGCACGGAATTTCTTCCAACAAATAATATCCGGTGTGGAATATTGCC ACAGGAATATGGTTGTTCATAGAGACCTCAAGCCTGAGAATCTGTTATTGGATTCTAAATGGAATGTGAAGATAGCTGATTTTGGGTTGAGCAATATAAT GCGTGATGGTCATTTCCTTAAGACAAGTTGTGGAAGCCCAAACTATGCTGCACCAGAGGTGATTTCTGGGAAACTGTATGCTGGACCTGAAGTAGATGTA TGGAGTTGTGGTGTTATATTGTATGCTCTTCTCTGCGGTACACTACCTTTCGATGATGAAAACATTCCCAACCTCTTTAAGAAAATAAAGGATGGGATAT ATACTCTTCCCAGCCATTTATCACCCGGAGCAAGAGATCTCATCCCAAGGATGCTTGTGGTTGATCCAATGAAGCGAATGACCATTCCTGAAATTCGTCA ACACCAATGGTTCCAAGCTCGCCTTCCCCGTTATTTGGCAGTGCCCCCACCAGATACATTGCAACAAGCTAAAAAGATTGACGAGGAGATTCTCCAGGAC GTTGTCAAGATGGGATTTGACAGGATCCAACTTATTGAATCTCTTCGCAACAGAATGCAAAATGAGGCTACTGTTGCTTACTATTTGTTATTGGACAATC GATTTCGTGTTTCCAATGGCTATCTTGGAGCTGAGTTCCAAGAAACTATGGAAACTGCATTCAATCGAATGCATCCAAACGAACCTTTGTCTCCAGCTGG AGGACACCGCCTTCCAGGATTCATGGATTATCAAGGAATGGGTTTGAAATCACAGTTCCCAGTGGAGAGGAAATGGGCTCTTGGCCTTCAGTCTCGAGCC CACCCTCGTGAAATAATGACAGAAGTTCTCAAAGCTTTGCAAGAACTGAATGTATGCTGGAAGAAAATTGGTCAGTACAATATGAAGTGCAGGTGGATTC CAGGCACTCCCGGTCACCATGAAGGAATGGTTAACCATCCTGCACACTACAATCATTTCTTTGGGGATGAACCCACCATTATTGAAAATGATGGAATCAT TAACTCACCAAATGTGGTCAAGTTTGAAGTGCAGCTATACAAAACTCGTGACGAGAAGTACCTGCTGGACTTGCAAAGAGTACAGGGCCCGCAGTTTCTC TTCTTGGATCTTTGTGCAGCTTTTCTAGCTCAGCTCCGGGTCCTGTAG
AA sequence Show only first row Show all	>Potri.017G087900.1 pacid=42813501 polypeptide=Potri.017G087900.1.p locus=Potri.017G087900 ID=Potri.017G087900.1.v4.1 annot-version=v4.1 MEGPSHRGSSGVDMYLPNYKLGKTLGIGSFGKVKIAEHALTGHKVAVKILNRRKIKNMEMEEKVRREIKILRLFMHPHIIRLYEVIETPTDIYVVMEYVK SGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKWNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDV WSCGVILYALLCGTLPFDDENIPNLFKKIKDGIYTLPSHLSPGARDLIPRMLVVDPMKRMTIPEIRQHQWFQARLPRYLAVPPPDTLQQAKKIDEEILQD VVKMGFDRIQLIESLRNRMQNEATVAYYLLLDNRFRVSNGYLGAEFQETMETAFNRMHPNEPLSPAGGHRLPGFMDYQGMGLKSQFPVERKWALGLQSRA HPREIMTEVLKALQELNVCWKKIGQYNMKCRWIPGTPGHHEGMVNHPAHYNHFFGDEPTIIENDGIINSPNVVKFEVQLYKTRDEKYLLDLQRVQGPQFL FLDLCAAFLAQLRVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01090		AKIN10, SnRK1.1	SNF1-RELATED PROTEIN KINASE 1....		Potri.017G087900 [exp]	0	1
AT5G50530			CBS / octicosapeptide/Phox/Bem...		Potri.015G098100 [exp]	3.00	0.7808
AT1G74960		ATKAS2, KAS2, F...	ARABIDOPSIS BETA-KETOACYL-ACP ...		Potri.006G138000 [exp]	8.77	0.7029	Pt-KAS2.2
AT5G62700		atgcp3, TUB3	tubulin beta chain 3 (.1)		Potri.001G464400 [exp]	15.87	0.7001
AT4G15470			Bax inhibitor-1 family protein...		Potri.008G199200 [exp]	17.88	0.7535
AT1G80280			alpha/beta-Hydrolases superfam...		Potri.001G174900 [exp]	21.42	0.7459
AT5G50870		UBC27	ubiquitin-conjugating enzyme 2...		Potri.015G103400 [exp]	26.64	0.7282
AT2G16370		THY-1	thymidylate synthase 1 (.1)		Potri.009G119200 [exp]	30.85	0.6662
AT4G16400			unknown protein		Potri.016G007101 [exp]	31.17	0.7273
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Potri.002G147702 [exp]	36.91	0.6740
AT3G26370			O-fucosyltransferase family pr...		Potri.010G048500 [exp]	37.41	0.6803

Compare expression of checked genes

Potri.017G087900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.