Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29180 615 / 0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) AT5G39430 561 / 0 Protein of unknown function (DUF1336) (.1) AT1G13970 474 / 1e-163 Protein of unknown function (DUF1336) (.1) AT1G59650 343 / 1e-112 CW14 Protein of unknown function (DUF1336) (.1) AT1G10410 340 / 2e-111 Protein of unknown function (DUF1336) (.1) AT5G25010 63 / 1e-10 Protein of unknown function (DUF1336) (.1) AT5G35180 61 / 2e-09 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) AT4G19040 59 / 9e-09 EDR2 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) AT5G45560 57 / 2e-08 Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein (.1) AT3G54800 56 / 5e-08 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G163100 [exp] 573 / 0 AT1G13970 543 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.008G190500 [exp] 365 / 2e-120 AT1G59650 579 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.010G040100 [exp] 355 / 2e-116 AT1G59650 598 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.017G074800 [exp] 333 / 8e-109 AT1G59650 472 / 6e-164 Protein of unknown function (DUF1336) (.1) Potri.008G213000 [exp] 61 / 1e-09 AT4G19040 1017 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.008G038800 [exp] 58 / 1e-08 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.018G113100 [exp] 56 / 5e-08 AT5G35180 1028 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Potri.010G223400 [exp] 56 / 6e-08 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.018G014234 [exp] 51 / 1e-06 AT5G10750 428 / 5e-152 Protein of unknown function (DUF1336) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026633 [exp] 424 / 5e-144 AT1G13970 504 / 4e-176 Protein of unknown function (DUF1336) (.1) Lus10030425 [exp] 419 / 1e-142 AT1G13970 499 / 2e-174 Protein of unknown function (DUF1336) (.1) Lus10037132 [exp] 418 / 4e-142 AT3G29180 470 / 9e-163 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) Lus10036683 [exp] 347 / 4e-114 AT1G59650 603 / 0.0 Protein of unknown function (DUF1336) (.1) Lus10010740 [exp] 345 / 3e-113 AT1G59650 610 / 0.0 Protein of unknown function (DUF1336) (.1) Lus10039463 [exp] 342 / 2e-111 AT1G59650 478 / 3e-165 Protein of unknown function (DUF1336) (.1) Lus10005831 [exp] 338 / 3e-110 AT1G59650 471 / 1e-162 Protein of unknown function (DUF1336) (.1) Lus10000174 [exp] 224 / 2e-71 AT1G13970 224 / 2e-72 Protein of unknown function (DUF1336) (.1) Lus10036799 [exp] 176 / 1e-50 AT1G13970 181 / 7e-53 Protein of unknown function (DUF1336) (.1) Lus10019591 [exp] 73 / 3e-13 AT5G35180 931 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07059 [poplar] [flax] DUF1336 Protein of unknown function (DUF1336)
Representative CDS sequence Show only first row Show all	>Potri.017G088000.6 pacid=42813672 polypeptide=Potri.017G088000.6.p locus=Potri.017G088000 ID=Potri.017G088000.6.v4.1 annot-version=v4.1 ATGGGCAGCTGCGTATCAACACCACCAAAAAAGATTAAATTACATAAAAGGCGCCATCGTAAGGGCAGACATCTTGTGAAGATATCCAATACTGTCCAGG ATGGAGCTACCAGGTGCAGAAAATCTGGAGTCTCCAATTCGACATTCCATCTCACCCAGTTGCAATGGCACCTCAGTCAAGTGGACTCTGATGTAATCCA AGAGGAACCATGGTTTGATACAGTCAGTATTCTGGAGTCAGATTCTGATGATGAATTCTGCAGTGTGCTTGGAGACCGCTTTTCATCAGTGGGTTCTACA ACTGGGAACATCTCAAGCGGACAAGTGCTTCAATATGAAAGCTCTTCATGTTTTGTGGATGGCAGTTATAAATATGAAGAATACCATGAAAGTTATATGA AAATAGATGGATCAAAAACAGGAAAAGATGAATACAAGGAATCCAAAGGATTTGCAGTTATTAGTGCTCAGGGTTATGATCTTTCACATTTTAGTAAAGC TGATGAAATTCGGAGGAAGAAATTATTAAATAATTCCTACGGAAGCTTCAAAGGTCTAAAAGAGGATAGACGTGACTCTCAGGAGAATAACTTGAAGTCA GGTCGATCTCGATTGGTTCCTTCTGTAAGTTTCAATGACAAGATTTTATCTGCTTCAGCTCCAAAAGGGAAGCTAGCAGTTTTTAGGCTTTCTTTTAAGA GGAAATCAGGTGATATTGGGGAAGAAGCTAGTGAACACTGTCCATCAAAAAGATTCTTGTACCGTCCTAAAGCAGGATTTGTTATTCCACGAGCCACGGG AGAGAAGCCAACTGCAGGATGTTGGTCTGAGATTCCACCCTCAAATTTCAAACTTCGTGGCCTGACCTATTTCAAAGATAAGCAGAAGTGCCCTGCTCCA ATTCACAGTCCATACACTCCAATTGGTGTAGATGTATTTGTCTGCCCAAGAAAGATAAATCACATAGCTCAACAACTTGATCTTCCAAACTTAAAATCAG ATGGGAAACTCCCTCCTCTGTTAATAGTAAATATTCAGATGCCAACCTATCCTGCTGCAATGTTCCTTGGTGATACTAATGGGGAAGGGATGAGTCTTGT ACTGTACTTCAAGGTTTCTGAAAACTTGGAGAAAGACATTTCTTCCCAATATCAAGACAATATCAAGAAATTGATTGAGGATGAGATGGAAAAGGTTAGA GGTTTTGCAAAAGACTCAACTGTTCCATATAGAGAAAGGATAAAGATCATGACTGGGTTGGTTAATCCTGAAGATCTCAATCTAAGTTCTACTGAAAGAA AGCTTGTTAATGCTTATAATGAAAAGCCAGTTCTTTCTCGTCCACAGCATGAATTTTTCAAGGGTCCTAACTACTTTGAGATTGATCTGGATATCCATCG CTTCAGCTACATATCAAGAAAGGGACTAGAATCATTTCGAGACCGCCTGAGGAATGGAATACTTGATCTGGGTCTAACTATCCAGGCACAGAAACAAGAA GAACTTCCGGAGCAAGTGTTGTGCTGTCTGAGATTGAACAGAATTGATTTTGTGGATCGTGGTCAACTGCCGAGGCTTATGACCCTTGATGATGACTAA
AA sequence Show only first row Show all	>Potri.017G088000.6 pacid=42813672 polypeptide=Potri.017G088000.6.p locus=Potri.017G088000 ID=Potri.017G088000.6.v4.1 annot-version=v4.1 MGSCVSTPPKKIKLHKRRHRKGRHLVKISNTVQDGATRCRKSGVSNSTFHLTQLQWHLSQVDSDVIQEEPWFDTVSILESDSDDEFCSVLGDRFSSVGST TGNISSGQVLQYESSSCFVDGSYKYEEYHESYMKIDGSKTGKDEYKESKGFAVISAQGYDLSHFSKADEIRRKKLLNNSYGSFKGLKEDRRDSQENNLKS GRSRLVPSVSFNDKILSASAPKGKLAVFRLSFKRKSGDIGEEASEHCPSKRFLYRPKAGFVIPRATGEKPTAGCWSEIPPSNFKLRGLTYFKDKQKCPAP IHSPYTPIGVDVFVCPRKINHIAQQLDLPNLKSDGKLPPLLIVNIQMPTYPAAMFLGDTNGEGMSLVLYFKVSENLEKDISSQYQDNIKKLIEDEMEKVR GFAKDSTVPYRERIKIMTGLVNPEDLNLSSTERKLVNAYNEKPVLSRPQHEFFKGPNYFEIDLDIHRFSYISRKGLESFRDRLRNGILDLGLTIQAQKQE ELPEQVLCCLRLNRIDFVDRGQLPRLMTLDDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G29180			Protein of unknown function (D...		Potri.017G088000 [exp]	0	1
AT4G26965			NADH:ubiquinone oxidoreductase...		Potri.003G122100 [exp]	3.16	0.9164
AT5G01980			RING/U-box superfamily protein...		Potri.016G141600 [exp]	3.16	0.9238
AT1G17280		UBC34	ubiquitin-conjugating enzyme 3...		Potri.003G073100 [exp]	3.46	0.9269
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Potri.001G401100 [exp]	5.09	0.8995
AT3G21610			Acid phosphatase/vanadium-depe...		Potri.014G156000 [exp]	5.19	0.9095
AT3G12150			unknown protein		Potri.006G058400 [exp]	6.92	0.8998
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Potri.002G254600 [exp]	6.92	0.9107
AT4G27220			NB-ARC domain-containing disea...		Potri.011G127200 [exp]	7.74	0.9072
					Potri.012G067350 [exp]	10.00	0.9084
AT1G27170			transmembrane receptors;ATP bi...		Potri.012G053200 [exp]	10.58	0.9058

Compare expression of checked genes

Potri.017G088000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.