Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39420 647 / 0 CDC2CAT CDC2C (.1) AT1G74330 617 / 0 Protein kinase superfamily protein (.1.2) AT1G18670 615 / 0 IBS1 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) AT3G01085 600 / 0 Protein kinase superfamily protein (.1) AT1G54610 521 / 1e-178 Protein kinase superfamily protein (.1.2.3) AT1G53050 522 / 3e-177 Protein kinase superfamily protein (.1) AT1G71530 504 / 1e-173 Protein kinase superfamily protein (.1.2) AT1G09600 504 / 8e-170 Protein kinase superfamily protein (.1) AT1G33770 493 / 5e-167 Protein kinase superfamily protein (.1) AT5G44290 488 / 2e-164 Protein kinase superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G067800 [exp] 646 / 0 AT1G18670 878 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Potri.015G061400 [exp] 644 / 0 AT1G18670 846 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Potri.005G045500 [exp] 543 / 0 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.008G204400 [exp] 535 / 0 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G032200 [exp] 534 / 0 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.001G399700 [exp] 531 / 2e-180 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.011G119400 [exp] 526 / 1e-178 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.012G103900 [exp] 521 / 3e-178 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1) Potri.015G103300 [exp] 519 / 1e-177 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015727 [exp] 650 / 0 AT1G18670 884 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Lus10034726 [exp] 620 / 0 AT1G18670 782 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Lus10021642 [exp] 603 / 0 AT1G18670 736 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Lus10030692 [exp] 602 / 0 AT5G39420 558 / 0.0 CDC2C (.1) Lus10005228 [exp] 570 / 0 AT5G39420 537 / 0.0 CDC2C (.1) Lus10012805 [exp] 534 / 0 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10004144 [exp] 531 / 1e-180 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001715 [exp] 527 / 1e-180 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033975 [exp] 523 / 3e-179 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10035892 [exp] 522 / 1e-178 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.017G088200.1 pacid=42814128 polypeptide=Potri.017G088200.1.p locus=Potri.017G088200 ID=Potri.017G088200.1.v4.1 annot-version=v4.1 ATGGGTTGCATTTACTCCAAAAGGGCGGTGTCTGTGGCCGCTGCCACCCCTGCTAATCTACAACCACCATACACAGCGACTGTTTTTGATCTTGCCTCAG AAAATCCATCTGGATCATTGGATTTTGAGCAGAATCACTTCAGCAAGGATAAAAAAGATAAAAGCTATAATATTTATAGAAAAAATAGCTTGTCATATAA AAATGGTGGCCATAATGAAGGGGGGGTGATATATGAAGATCAACAACGTCGTCGTCATCATCATCAAAGTAGCAATCATGGAAACAATAAAAATTTGAGG AAAAGAGGGAGCTCTGGTAGTGGATCAATTAGTTTCAAATTGGGGTTCTCAAGTAGGAATGTTGGGGTTGAACAGGTTGCTGCTGGATGGCCTTCTTGGC TTAGTGCTGCAGCTGGTGAAGCCATTCATGGTTGGGTGCCTCTAAGAGCTGAAGCTTTTGAGAAATTAGATAAGATTGGACAAGGCACTTACAGCAGCGT GTTCCAAGCACGCGATGTTGAAACTGGGAGGATGGTTGCCCTGAAGAAGGTTCGCTTTGACAATTTTAAACCAGAGAGCATTAGATTTATGGCCCGTGAA ATAATGATTCTCCGCAGGCTTGACCATCCAAATATTATGAAGTTGGAGGGAATAATTACTTCTCGATTGTCGAGCAGCATTTACCTCGTGTTTGAATACA TGGAGCATGATCTTTCTGGACTGTTGTCTTCTCCAGATATCAAGTTCACTGAGTCACAGGTCAAGTGCTATATGAAGCAGCTATTATGTGGAATTGAGCA CGTCCATTCACTAGGTATAATGCACCGGGATATCAAAGCATCCAACATTTTGCTAAACAATGAGGGAATTCTGAAAATAGGAGATTTTGGATTGGCCAAT GTTCTTAATTCAAGGAACCAGAACCAATTAACAAGTCGTGTGGTGACTTTATGGTATCGTCCCCCTGAACTTTTGATGGGCTCAACAAGTTATGGTGTAT CAGTGGACCTGTGGAGTGTGGGCTGTGTATTTGGTGAAATCCTCTTTGGGAAGCCTCTACTCAAGGGGAGAACTGAGGTTGAACAATTACACAAAATCTT CAAACTTTGTGGTTCTCCTTCTGATGACTTCTGGAAACGATCTAAGCTTTCCAATGCTACCATGTTCAAACCCCAGCATCCTTATGAAAGTTCTCTTCAA GAGAGGTGCAAAGATATTCCAGCAGCTGCTTTGAACCTGATGGAAACTCTTCTTTCCATAGAACCAGAAAAGCGTGGGACTGCCTCCGCTGCCCTTTTGT CTCAGTATTTCAGAACAACGCCATATGCATGTGAACCATCAAGCTTGCCACAGTATCCACCTAACAAAGAAATGGATGCCAAATATCGAGAGGAAGCACG AAGGAAAAAGGCTGGTAGTAGAATGCGAGATCCAGGACTCCCAAGAAAACCAAGAAGAGTTCATCGGACATTCCAGGAACAAAACTTCAATAAATTTGCA CCAAAGGAGGAAGTGAAAGATAACTCTGAATTTGTTCGTTTGGCTAATGATAATAATGCATACGCGAAAGGAAGAAAAGGAGCGAGTAGAGAGCAAAATT TATTTTCTGATACAATCTCAGAGACAGCCCAGGCAACAAAAGGACACTATTCTTTCACAGGACCAGCACAAGTCACAGCATCAAGTGGCTTTGCATGGGC AAAGACACGGAAAGAGGATTCTACATCCACAGTATCTTATGATCCATCTGTCTCATCAAGTCAAATAAGTGCTGAAGATTCATCAAGGTTCAACTTTGCA AACAGCTCCTTTGACTTCACGAAGGCAGAGAATGGGAGAAACAATTTCCTTGAGGATTCTGCCAAGCATGTGATGCAGAAGCAGCATAACCAATCTGATC CCTTTGATTCTCTTAATGCATCTGAGGCATACTATTTTAATGATCTCAACAGAACTGAAGATGCAGTTGTGGACCACAGTAAAGAAAGGGAGAAGATTGA ATTTTCAGGCCCGTTGTTATTCAGACCAAATAAAATTGAAGAACTCTTGCAAAGGAATGAAAGTCAAATACGTCGAGCAGCTCGAAGAACAAGGTTGGCT ACGGAAATGTGA
AA sequence Show only first row Show all	>Potri.017G088200.1 pacid=42814128 polypeptide=Potri.017G088200.1.p locus=Potri.017G088200 ID=Potri.017G088200.1.v4.1 annot-version=v4.1 MGCIYSKRAVSVAAATPANLQPPYTATVFDLASENPSGSLDFEQNHFSKDKKDKSYNIYRKNSLSYKNGGHNEGGVIYEDQQRRRHHHQSSNHGNNKNLR KRGSSGSGSISFKLGFSSRNVGVEQVAAGWPSWLSAAAGEAIHGWVPLRAEAFEKLDKIGQGTYSSVFQARDVETGRMVALKKVRFDNFKPESIRFMARE IMILRRLDHPNIMKLEGIITSRLSSSIYLVFEYMEHDLSGLLSSPDIKFTESQVKCYMKQLLCGIEHVHSLGIMHRDIKASNILLNNEGILKIGDFGLAN VLNSRNQNQLTSRVVTLWYRPPELLMGSTSYGVSVDLWSVGCVFGEILFGKPLLKGRTEVEQLHKIFKLCGSPSDDFWKRSKLSNATMFKPQHPYESSLQ ERCKDIPAAALNLMETLLSIEPEKRGTASAALLSQYFRTTPYACEPSSLPQYPPNKEMDAKYREEARRKKAGSRMRDPGLPRKPRRVHRTFQEQNFNKFA PKEEVKDNSEFVRLANDNNAYAKGRKGASREQNLFSDTISETAQATKGHYSFTGPAQVTASSGFAWAKTRKEDSTSTVSYDPSVSSSQISAEDSSRFNFA NSSFDFTKAENGRNNFLEDSAKHVMQKQHNQSDPFDSLNASEAYYFNDLNRTEDAVVDHSKEREKIEFSGPLLFRPNKIEELLQRNESQIRRAARRTRLA TEM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39420		CDC2CAT	CDC2C (.1)		Potri.017G088200 [exp]	0	1
AT1G24764		ATMAP70-2	microtubule-associated protein...		Potri.006G039200 [exp]	1.73	0.9155
AT1G06920	OFP	ATOFP4, OFP4	ARABIDOPSIS THALIANA OVATE FAM...		Potri.013G155200 [exp]	2.82	0.8883
AT2G38970			Zinc finger (C3HC4-type RING f...		Potri.008G038450 [exp]	2.82	0.9054
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.001G065900 [exp]	3.46	0.9002
AT2G47930		AGP26, ATAGP26	ARABIDOPSIS THALIANA ARABINOGA...		Potri.002G207500 [exp]	3.87	0.9021
AT5G20540		ATBRXL4, BRX-LI...	BREVIS RADIX-like 4 (.1)		Potri.018G064900 [exp]	5.19	0.9046
AT1G26560		BGLU40	beta glucosidase 40 (.1)		Potri.008G094200 [exp]	5.29	0.9027	Pt-HIUHASE.1
AT4G24780			Pectin lyase-like superfamily ...		Potri.001G339500 [exp]	7.87	0.8476
AT3G55420			unknown protein		Potri.010G203900 [exp]	8.66	0.8537
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Potri.016G013700 [exp]	8.77	0.8905	GDI1.2

Compare expression of checked genes

Potri.017G088200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.