Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29200 352 / 2e-121 ATCM1, CM1 ARABIDOPSIS THALIANA CHORISMATE MUTASE 1, chorismate mutase 1 (.1) AT1G69370 332 / 5e-114 CM-3, CM3 chorismate mutase 3 (.1) AT5G10870 247 / 5e-81 ATCM2 chorismate mutase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G162300 [exp] 333 / 2e-114 AT1G69370 370 / 6e-129 chorismate mutase 3 (.1) Potri.018G019250 [exp] 243 / 2e-79 AT5G10870 303 / 1e-103 chorismate mutase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015378 [exp] 356 / 9e-118 AT3G29185 474 / 2e-162 Domain of unknown function (DUF3598) (.1), Domain of unknown function (DUF3598) (.2) Lus10032998 [exp] 328 / 4e-112 AT3G29200 359 / 2e-124 ARABIDOPSIS THALIANA CHORISMATE MUTASE 1, chorismate mutase 1 (.1) Lus10019795 [exp] 270 / 5e-91 AT3G29200 288 / 3e-98 ARABIDOPSIS THALIANA CHORISMATE MUTASE 1, chorismate mutase 1 (.1) Lus10007444 [exp] 209 / 7e-66 AT5G10870 310 / 1e-106 chorismate mutase 2 (.1) Lus10014114 [exp] 168 / 2e-51 AT1G69370 199 / 7e-64 chorismate mutase 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G088700.2 pacid=42813147 polypeptide=Potri.017G088700.2.p locus=Potri.017G088700 ID=Potri.017G088700.2.v4.1 annot-version=v4.1 ATGGAGGCTAAGCTATTAGGAGCTTCTTGCCCGGCTTTTCTAGCTTCTAAAGAATCAAGATTTTCAAGGGCTAATTATAGTTTAGGTCTCCAAACCGGGC AGAATGGCACAACTTTAAGAGTTAGCTGCCCAAACTTGACAAAGAGACGCATTCTATCAGTCCAAGCATCTGCTGTATCCATGGGGCTGACAGAGAAGAA AAGGGTGGACATAAGCGAGAATTTGACCCTAGATAACATCAGGAGTTCCTTGATTCTACAAGAGGATAGTATAATATTTAGCCTCTTAGAGAGATCCCAA TACTGTTATAATGCCAGTACCTATGACCCTGAAGCTTTTGCATTGGAAGGGTTCCATGGTTCTCTGATTGAGTTCATCCTTAAGGAAACTGAAAAGCTAC ATGCTCAGCTTGGCAGATACAAGAGCCCTGATGAACATCCTTTTTTCCCGGATGACTTACCTGAGCCAGTGTTGCCACCCTTGCAGTATCCACAGGTACT ACATCCCATTACTGATTCAATAAATATAAATAAGACAGTATGGGACATGTATTTTAGAGAACTTATTCCTAGATTGGTCAAAGAAGGAGATGATGGCAAT TGTGGATCAACAGCTGTTTGTGACACAATCTGTCTACAGGCTCTCTCAAAAAGAATCCATTATGGAGAATTTGTAGCAGAGGCTAAATTTCGGGCTTCTC CAGATGATTATGAGGCTGCCATTAGAGCACAAGACAGCAAAAGACTGATGGAAATTCTGACATACCCAGCAGTTGAAGAGGCGGTGAAAAAGAGAGTTGA GATGAAAGCTAAAGCTTTTGGGCAGGAAGTGACGATGGAAGGAGAAATAGATGGAACTGACCCAGTGTACAAAATACGACCAACCCTGGTTGCTGATTTA TATGGTGAATGGATCATGCCGCTGACAAAGGAGGTTCAAGTTCAGTACTTGCTAAGAAGGTTGGATTAA
AA sequence Show only first row Show all	>Potri.017G088700.2 pacid=42813147 polypeptide=Potri.017G088700.2.p locus=Potri.017G088700 ID=Potri.017G088700.2.v4.1 annot-version=v4.1 MEAKLLGASCPAFLASKESRFSRANYSLGLQTGQNGTTLRVSCPNLTKRRILSVQASAVSMGLTEKKRVDISENLTLDNIRSSLILQEDSIIFSLLERSQ YCYNASTYDPEAFALEGFHGSLIEFILKETEKLHAQLGRYKSPDEHPFFPDDLPEPVLPPLQYPQVLHPITDSININKTVWDMYFRELIPRLVKEGDDGN CGSTAVCDTICLQALSKRIHYGEFVAEAKFRASPDDYEAAIRAQDSKRLMEILTYPAVEEAVKKRVEMKAKAFGQEVTMEGEIDGTDPVYKIRPTLVADL YGEWIMPLTKEVQVQYLLRRLD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G29200		ATCM1, CM1	ARABIDOPSIS THALIANA CHORISMAT...		Potri.017G088700 [exp]	0	1
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Potri.010G223900 [exp]	1.00	0.8045
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Potri.006G167200 [exp]	2.82	0.7950	PSC450.2
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Potri.009G148800 [exp]	3.87	0.7921
AT5G23130			Peptidoglycan-binding LysM dom...		Potri.012G036600 [exp]	4.89	0.7443
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Potri.016G091100 [exp]	4.89	0.7766	PAL1.3,PAL4
AT2G45420	AS2	LBD18, ASL20	LOB domain-containing protein ...		Potri.002G149000 [exp]	5.83	0.8042
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Potri.010G027600 [exp]	6.00	0.8030
AT2G14095			unknown protein		Potri.001G310100 [exp]	6.48	0.7797
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Potri.014G096100 [exp]	9.16	0.7389
AT1G69370		CM-3, CM3	chorismate mutase 3 (.1)		Potri.010G162300 [exp]	12.48	0.7803

Compare expression of checked genes

Potri.017G088700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.