Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15400 1557 / 0 U-box domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G121200 [exp] 1923 / 0 AT5G15400 1509 / 0.0 U-box domain-containing protein (.1) Potri.002G248600 [exp] 45 / 0.0003 AT3G07360 573 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030697 [exp] 1432 / 0 AT5G15400 1391 / 0.0 U-box domain-containing protein (.1) Lus10005222 [exp] 1378 / 0 AT5G15400 1340 / 0.0 U-box domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain CL0229 [poplar] [flax] PF10408 [poplar] [flax] Ufd2P_core Ubiquitin elongating factor core
Representative CDS sequence Show only first row Show all	>Potri.017G089600.2 pacid=42813118 polypeptide=Potri.017G089600.2.p locus=Potri.017G089600 ID=Potri.017G089600.2.v4.1 annot-version=v4.1 ATGGCAACAACCTCAAATAAACCTCAAAGATCTCTCGAAGAAATAGAGGACATAATCGTCCGCAAAATCCTCTTAATCTCTCTCACCGATTCCTCTGATC CTCGAATTATCTACTTAGAAATGACTGCTGCTGAGATTCTCAGTGAAGGCAAAGACTTGAAACTCAACCGCGACTTGATCGAACGTGTCTTAATCGATCG ATTGTCTGTCCAAAACCCTAACGCGGAACCTCCTTTCAATTACCTCTTAGGTTGTTACCGCCGCGCGGTTGATGAGTTGAAGAAAATCGCGAATATGAAG GACAAAATTGTCAAATCAGAGCTGGAATTGTCGATCAGGCAACTGAAGAAGTTGTCGGTTTCTTATTGTAGGATTCATTTGGGAAATCCTGAGTTGTTTG GGGATGATTCGAATGTTGTTAAAGGGAGTGGGAACTCGAATGTTTCGCCGGTTCTGCCGTTGATTTTTGCGATGGTTGATGGGTTTAATAGTGGTGGAAT TCAGCCTCCGCCGGGGTTTTTGGAGGAGCTGTTTAGAGAAGGGGATCTTGATAGTTTGGATCCGATTTTCAAGGGTTTATATGAGGACTTGAGAGGAAAT GTTTTAAAGGTTTCTGTTTTAGGGAATTTTCAACAACCATTGAGGGCTTTATTGTTCTTGGTTAGTTTTACCGTTGGTGCTAAATCACTTGTTGGTCATA AGTGGTGGATTCCGACAGGGGCTTATGTAAATGGGAGAGTTATAGAAATGACAAGTATTTTGGGTCCCTTTTTTCATGTGAGTGCATTGCCAGATAATAC CATTTTTAAGAGCGAGCCGGATGTTGGGCAGCAGTGTTTCTCTGATGCAACAAACCGTCGACAGGCTGATTTGTTATCTTCATTTACTACAATTAAGACT CTAATGAATCATTTATATGATGGTTTATCAGAAGTGCTTCTTGCTCTACTTAAAAATAGTGATACTCGTGAGAGTGTTCTTCAGTATCTTGCTGAGGTGA TAAATAGAAATGCAACAAGAGCTCATATACAAGTTGATCCTTTATCTTGTGCAAGTTCTGGCATGTTTGTCAATCTAAGTGCTGTCATGCTTCGGCTCTC TGAACCATTCCTAGATGCAAATTTGTCGAAAAAAGACAAAATTGATCCAAATTATGTGTTTCAAAATAACCGTTTGGATATAAGAGGGTTGACAGCTCTG CATGCATCATCAGAAGAAATTACTGAATGGCTTAATACTCCTCGGAAAACTGATGTCTCTGCACTATCTAGTGACGAAGAAAATCGCTTGTTACAATCTC AAGAAGCCTCCAGTTCTGGTAACAGTGGTGAAAAGGCTAAATACTCATTTATTTGTGAGTGCTTCTTTATGACTGCAAGGGTGCTCAACTTGGGTCTGTT GAAAGCATTTTCTGACTTTAAGCATCTAGTTCAGGACATTTCTAGATGTGAAGATACACTCTCCACATTTAAAGCCTTGCAAAAGCAGACGCCATCTCCG CAGCTGCAGCTGGATATCGATCGTCTTGAGAAAGAAATAGAGTTGTATTCACAGGAAAAGCTTTGTTATGAAGCTCAGATATTAAGGGATGGAGCACTTA TTCAGCATGCACTTTCTTTCTACCGGTTGATGTTGGTTTGGTTGGTTAACTTGGTTGGTGGATTTAAAATGCCTCTGCCATTAACTTGCCCAAAGGAATT TGCCTCGATGCCGGAGCATTTTGTTGAAGATGCCATGGAATTACTTATCTTTGCTTCTCGGATTCCAAAAGCTTTGGACGGAGTCTTACTAGATGATTTT ATGAATTTCATTATCATGTTCATGGCAAGTCCAACATATATTAGAAATCCTTATTTAAGAGCAAAGATGGTTGAAGTATTGAACTGCTGGATGCCACGGA GAAGTGGTTCATCTGCTACAGCTTCTCTATTTGAAGGGCACCATTTGTCGCTTGAGTATCTTGTGAGGAACCTCTTGAAGCTTTATGTTGACATTGAATT CACAGGTTCTCACACACAGTTCTTTGACAAGTTCAACATACGGCATAATATTGCTGAACTTCTTGAATACCTGTGGCAGGTCCCTAGTCATCGTAACATT TGGATGAAGATCGCAAAGGAAGAGGAAAAGGGTGTCTATCTGAAATTTTTGAACTTCCTGATCAACGACAGCATCTATCTTCTTGATGAAAGTCTGAACA AAATTCTTGAAATCAAAGGGTTAGAAGCTGAGATGTCCAACACCACAGAATGGGAGCGCAGACCAGCTCAAGAGAGACAGGAGAGAACCCGCCTTTTCCA TTCCCAAGAGAATATCATCCGCATTGATATGAAGTTGGCAAATGAAGATGTGAGCATGCTGACATTTACATCAGAACAAATTACAGCACCTTTCCTGCTT CCTGAGATGGTTGACAGAGTGGCCACCATGCTCAATTACTTCTTGTTACAACTTGTGGGTCCCCAAAGGAGATCTCTCACCCTGAAAGACCCTGAAAAGT ATGAATTCCGCCCAAAACAGTTGCTTAAGCAGATTGTCCATATATATGTTCATCTGGCGAGGGGTGATACTGAAAACATATTCCCAGCTGCCATCTTGAA GGATGGGCGATCATACAATGAGCAGTTATTTACTGCTGCTGCCGATGTCCTTCGGAGAATTGGTGAAGATGGTAGAGTTGTCCAGGAATTTATTGAGCTC GGTACAAAAACCAAGGTTGCAGCTTCTGAGGCAATGGATGCTGAAGTTACCCTTGGAGAGGTACCAGAAGAATTCCTTGATCCAATTCAGTGCACTTTGA TGAAGGATCCGGTGATTTTGCCGTCTTCAAGAACCACAGTTGACAGGCCTGTCATTCTAAGGCATCTTCTGAGTGACAATACGGATCCCTTCAATCGATC ACATCTTACTGTGGACATGCTGATTTCAAACACTGAGTTGAAGGCAAGAATAGATGAGTACATTAGGTCTCAAGAATTAAAGAGGCATGGGGAAGACTTC AGCTTGCAAAGGGCCAAAGAAACAATCCAAACCACAACTGAAGAAATGTTGATTGATTAG
AA sequence Show only first row Show all	>Potri.017G089600.2 pacid=42813118 polypeptide=Potri.017G089600.2.p locus=Potri.017G089600 ID=Potri.017G089600.2.v4.1 annot-version=v4.1 MATTSNKPQRSLEEIEDIIVRKILLISLTDSSDPRIIYLEMTAAEILSEGKDLKLNRDLIERVLIDRLSVQNPNAEPPFNYLLGCYRRAVDELKKIANMK DKIVKSELELSIRQLKKLSVSYCRIHLGNPELFGDDSNVVKGSGNSNVSPVLPLIFAMVDGFNSGGIQPPPGFLEELFREGDLDSLDPIFKGLYEDLRGN VLKVSVLGNFQQPLRALLFLVSFTVGAKSLVGHKWWIPTGAYVNGRVIEMTSILGPFFHVSALPDNTIFKSEPDVGQQCFSDATNRRQADLLSSFTTIKT LMNHLYDGLSEVLLALLKNSDTRESVLQYLAEVINRNATRAHIQVDPLSCASSGMFVNLSAVMLRLSEPFLDANLSKKDKIDPNYVFQNNRLDIRGLTAL HASSEEITEWLNTPRKTDVSALSSDEENRLLQSQEASSSGNSGEKAKYSFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDTLSTFKALQKQTPSP QLQLDIDRLEKEIELYSQEKLCYEAQILRDGALIQHALSFYRLMLVWLVNLVGGFKMPLPLTCPKEFASMPEHFVEDAMELLIFASRIPKALDGVLLDDF MNFIIMFMASPTYIRNPYLRAKMVEVLNCWMPRRSGSSATASLFEGHHLSLEYLVRNLLKLYVDIEFTGSHTQFFDKFNIRHNIAELLEYLWQVPSHRNI WMKIAKEEEKGVYLKFLNFLINDSIYLLDESLNKILEIKGLEAEMSNTTEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLTFTSEQITAPFLL PEMVDRVATMLNYFLLQLVGPQRRSLTLKDPEKYEFRPKQLLKQIVHIYVHLARGDTENIFPAAILKDGRSYNEQLFTAAADVLRRIGEDGRVVQEFIEL GTKTKVAASEAMDAEVTLGEVPEEFLDPIQCTLMKDPVILPSSRTTVDRPVILRHLLSDNTDPFNRSHLTVDMLISNTELKARIDEYIRSQELKRHGEDF SLQRAKETIQTTTEEMLID

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15400			U-box domain-containing protei...		Potri.017G089600 [exp]	0	1
AT2G23890			HAD-superfamily hydrolase, sub...		Potri.018G100600 [exp]	6.48	0.7332
AT3G58560			DNAse I-like superfamily prote...		Potri.006G195600 [exp]	10.53	0.7622
AT5G46210		CUL4, ATCUL4	cullin4 (.1)		Potri.011G084400 [exp]	12.36	0.7220
AT3G14010		CID4	CTC-interacting domain 4 (.1.2...		Potri.001G171100 [exp]	12.48	0.7742
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Potri.011G065200 [exp]	29.73	0.7362
AT1G04300			TRAF-like superfamily protein ...		Potri.010G075000 [exp]	31.14	0.7359
AT3G14270		FAB1B	FORMS APLOID AND BINUCLEATE CE...		Potri.003G072300 [exp]	39.64	0.7298
AT5G61150		VIP4	VERNALIZATION INDEPENDENCE 4, ...		Potri.012G065600 [exp]	43.12	0.7301
AT1G72390			unknown protein		Potri.003G069200 [exp]	50.28	0.7302
AT4G29860		EMB2757, TAN	TANMEI, EMBRYO DEFECTIVE 2757,...		Potri.009G002100 [exp]	53.83	0.7185

Compare expression of checked genes

Potri.017G089600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.