Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39400 554 / 0 ATPTEN1 Phosphatase and TENsin homolog deleted on chromosome ten 1, Calcium/lipid-binding (CaLB) phosphatase (.1) AT3G19420 168 / 4e-46 PTEN2A, ATPEN2 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) AT3G50110 168 / 4e-46 PTEN2B, ATPEN3 phosphatase and TENsin homolog deleted on chromosome ten 2B, Arabidopsis thaliana phosphatase and TENsin homolog deleted on chromosome ten 3, PTEN 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G047900 [exp] 167 / 8e-46 AT3G19420 702 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) Potri.001G302000 [exp] 163 / 3e-44 AT3G19420 848 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) Potri.009G098000 [exp] 159 / 6e-43 AT3G19420 811 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027876 [exp] 153 / 9e-41 AT3G19420 777 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) Lus10002826 [exp] 152 / 2e-40 AT3G19420 777 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) Lus10010265 [exp] 130 / 2e-33 AT3G19420 555 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF10409 [poplar] [flax] PTEN_C2 C2 domain of PTEN tumour-suppressor protein CL0031 [poplar] [flax] Phosphatase PF13350 [poplar] [flax] Y_phosphatase3 Tyrosine phosphatase family
Representative CDS sequence Show only first row Show all	>Potri.017G089700.1 pacid=42813554 polypeptide=Potri.017G089700.1.p locus=Potri.017G089700 ID=Potri.017G089700.1.v4.1 annot-version=v4.1 ATGGGGTTGAAGTTTGCGAAGCAGGGGCCAGGAAAGGCTTTGAACACAGATTTGTCTCATGCTCAACTCTCATTGATTAATTGTATCACCAAGAGTATTT ATATTCGTAACTGGGTATCCAAGCATCGAAGGCGAATGCTTGTTGCTGGTTATGATCTTGACATGTCTTATATCACAGGTCGTATATTGGCAATGTCATT CCCTGCAGAGCGTGTGCGAGCAATGTATCGTAATCCTCTCTGGCAGGTGAAATCTGTACTGGACATGCGGCATGGGGAGCATTATAAGATTTATAATTTG TGTATTGAGGAAGCTTATGATCCATCACATTTTCATGGCCGTGTTGAGACATATCCTTTCGACGACAACCATGTCCCACCTCTTGAAATGATGAAGCTCT TTTGTGAGAGTGTGGGTTCATGGCTATCATCTGACCCAAGAAATATCGCAGTCGTACACTGCATGGCAGGCAAAGGTCGAACAGGCTTAATGGTATGTGC CTACCTTGTTTACAGTGGCATGACACCTGAGGATGCTCTTCAGCTATATGCAAATAAACGCACCACCAATAATCAAGGAGTCTCAATACCAAGCCAACGT CGTTATGTGGGATACTGGGCAGAGGCACTTTCTTTTCCCAAGAGAGTTTATGATAGTCATAGAGGTGATGGTCATACACCTCCTGAAGTGATCTTGCCTC AATCTCGTATCAGAGAATTGCGAAGAATTCGACTTTATGACATGGTTAACACTGAATCCGTTTTCTTTGTGGTCTCAGAGTTACAGGAGATTCCAGGTCA GCTGTACCGTCCATCTGTGGAAGTTGCCAAGAGTTGCCTACGACCAATTATAAAAGGATATCAGAGAAACAGTAGTCCTCAATATTACATCTCCTTTACG GAAGGCAATGAAGAAGAAGAGGAGGATTTAAAACCCGCAGAATCGCGCCTCATTGTTCAAATGGACACAGAGAGTCCTATAATCTACCAGAAGACCACTC TTGATTATTATTTTGATAAACCTATACGAGTCAAGGGAGATGTGCGTGTCATATTCTACCAGAAAATGATAGGAGGGCGTCTCTTCTATGTCTGCTTCAA CACAGCTTTCATTAGGAATGGCTTGCTGCAGTTCTCAACACGAGATTTGGATAAAGTTGGGACTAAAGGCAGATCGATATGTGGCCCTGCCTTCTGCCTG GAGTTGCTCTTTGCTCCAGCTAATTCAAACCATTCAGGCACGCTAACCGAGGACGATAATGGTGGTGGTGGTGGTGGTGACGACATTAGTAATGACTGTC CTTGA
AA sequence Show only first row Show all	>Potri.017G089700.1 pacid=42813554 polypeptide=Potri.017G089700.1.p locus=Potri.017G089700 ID=Potri.017G089700.1.v4.1 annot-version=v4.1 MGLKFAKQGPGKALNTDLSHAQLSLINCITKSIYIRNWVSKHRRRMLVAGYDLDMSYITGRILAMSFPAERVRAMYRNPLWQVKSVLDMRHGEHYKIYNL CIEEAYDPSHFHGRVETYPFDDNHVPPLEMMKLFCESVGSWLSSDPRNIAVVHCMAGKGRTGLMVCAYLVYSGMTPEDALQLYANKRTTNNQGVSIPSQR RYVGYWAEALSFPKRVYDSHRGDGHTPPEVILPQSRIRELRRIRLYDMVNTESVFFVVSELQEIPGQLYRPSVEVAKSCLRPIIKGYQRNSSPQYYISFT EGNEEEEEDLKPAESRLIVQMDTESPIIYQKTTLDYYFDKPIRVKGDVRVIFYQKMIGGRLFYVCFNTAFIRNGLLQFSTRDLDKVGTKGRSICGPAFCL ELLFAPANSNHSGTLTEDDNGGGGGGDDISNDCP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39400		ATPTEN1	Phosphatase and TENsin homolog...		Potri.017G089700 [exp]	0	1
AT3G26660	AS2	LBD24	LOB domain-containing protein ...		Potri.015G135900 [exp]	3.60	0.7537	LBD23.2
AT5G64080		AtXYP1	xylogen protein 1, Bifunctiona...		Potri.002G092800 [exp]	4.24	0.7946
AT5G26250			Major facilitator superfamily ...		Potri.001G248900 [exp]	21.44	0.8554
					Potri.005G243501 [exp]	27.16	0.8195
AT1G17030			unknown protein		Potri.001G382000 [exp]	31.36	0.8195
					Potri.015G088350 [exp]	47.71	0.7618
AT4G33865			Ribosomal protein S14p/S29e fa...		Potri.004G043600 [exp]	50.31	0.7215
					Potri.006G047250 [exp]	74.29	0.6645
					Potri.008G111650 [exp]	100.48	0.7330
					Potri.003G073750 [exp]	146.49	0.6525

Compare expression of checked genes

Potri.017G089700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.