Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15410 1005 / 0 ATCNGC2, DND1 DEFENSE NO DEATH 1, CYCLIC NUCLEOTIDE GATED CHANNEL 2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, Cyclic nucleotide-regulated ion channel family protein (.1.2) AT5G54250 578 / 0 HLM1, DND2, ATCNGC4 DEFENSE, NO DEATH 2, cyclic nucleotide-gated cation channel 4 (.1.2.3) AT2G24610 363 / 4e-115 ATCNGC14 cyclic nucleotide-gated channel 14 (.1) AT1G01340 360 / 3e-114 ACBK1, ATCNGC10 cyclic nucleotide gated channel 10 (.1.2) AT1G15990 358 / 3e-113 ATCNGC7 cyclic nucleotide gated channel 7 (.1) AT4G01010 356 / 7e-113 ATCNGC13 cyclic nucleotide-gated channel 13 (.1) AT1G19780 357 / 2e-112 ATCNGC8 cyclic nucleotide gated channel 8 (.1) AT5G53130 353 / 2e-111 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) AT2G23980 352 / 1e-110 ATCNGC6 CYCLIC NUCLEOTIDE GATED CHANNEL 6, cyclic nucleotide-gated channel 6 (.1) AT5G57940 348 / 2e-109 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G089900 [exp] 955 / 0 AT5G15410 911 / 0.0 DEFENSE NO DEATH 1, CYCLIC NUCLEOTIDE GATED CHANNEL 2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, Cyclic nucleotide-regulated ion channel family protein (.1.2) Potri.001G407800 [exp] 596 / 0 AT5G54250 972 / 0.0 DEFENSE, NO DEATH 2, cyclic nucleotide-gated cation channel 4 (.1.2.3) Potri.001G043900 [exp] 370 / 1e-117 AT1G19780 967 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.003G183000 [exp] 365 / 9e-116 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.018G106100 [exp] 361 / 4e-114 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.012G002200 [exp] 353 / 2e-111 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.018G097600 [exp] 350 / 2e-110 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.014G097900 [exp] 344 / 5e-108 AT1G01340 901 / 0.0 cyclic nucleotide gated channel 10 (.1.2) Potri.002G170000 [exp] 344 / 7e-108 AT1G01340 909 / 0.0 cyclic nucleotide gated channel 10 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030698 [exp] 880 / 0 AT5G15410 854 / 0.0 DEFENSE NO DEATH 1, CYCLIC NUCLEOTIDE GATED CHANNEL 2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, Cyclic nucleotide-regulated ion channel family protein (.1.2) Lus10005221 [exp] 704 / 0 AT5G15410 680 / 0.0 DEFENSE NO DEATH 1, CYCLIC NUCLEOTIDE GATED CHANNEL 2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, Cyclic nucleotide-regulated ion channel family protein (.1.2) Lus10004509 [exp] 557 / 0 AT5G54250 948 / 0.0 DEFENSE, NO DEATH 2, cyclic nucleotide-gated cation channel 4 (.1.2.3) Lus10041662 [exp] 365 / 1e-115 AT1G19780 1056 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10024073 [exp] 363 / 5e-115 AT1G19780 1033 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10021461 [exp] 360 / 2e-114 AT2G28260 1029 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10037394 [exp] 354 / 3e-112 AT2G28260 983 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10015510 [exp] 353 / 5e-111 AT4G30360 1004 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10022155 [exp] 352 / 1e-110 AT4G30560 1095 / 0.0 cyclic nucleotide gated channel 9 (.1.2) Lus10019983 [exp] 351 / 3e-110 AT4G30360 1000 / 0.0 cyclic nucleotide-gated channel 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF00027 [poplar] [flax] cNMP_binding Cyclic nucleotide-binding domain CL0030 [poplar] [flax] Ion_channel PF00520 [poplar] [flax] Ion_trans Ion transport protein
Representative CDS sequence Show only first row Show all	>Potri.017G089800.1 pacid=42813132 polypeptide=Potri.017G089800.1.p locus=Potri.017G089800 ID=Potri.017G089800.1.v4.1 annot-version=v4.1 ATGCCTTCCCAGCCCAACTCCCACTTCTCCCTTCCAAGGTGGATTGGATTACTGTGTCACAAGAACAGCCAAAGCGAAACTGGTGACAATAGTGACAACA GCAACCTTAACAGTACCAACAACATTGACGACAGCAACCCAATCTCTAACTCCATAGAATGCTACGCTTGCACACAAGTAGGAGTCCCTGTCTTCCACTC CACAAGCTGTGACCAGGCCCACCAGCCTGAATGGGAGGCCTCCGCGGGCTCATCATTAGTCCCCATCAAAAACCGGCTCGGTTCAAGAAAGAGCCCAGCT AACCGAGCCCAATCTCGCCGGCCGGCCGGTCCATTAGGAACTGTTCTCGATCCACGTAGCAAGCGCGTACAGAAATGGAACCGGGCTTTCCTGCTAGCAC GTGGCATGGCTTTGGCGGTCGATCCCTTGTTTTTCTACGCTTTGTCGATAGGGAGAAACGGGGCCCCTTGCTTGTACATGGACGGTGGGTTGGCCGCAAT CGTGACCGTCCTTCGCACGAGTGTGGATGCTATACACTTGTGCCATCTGTGGTTACAGTTCAGGTTGGCTTATGTGTCAAGAGAGTCTCTTGTTGTGGGG TGCGGGAATCTGGTGTGGGACGCACGTGCCATTGCATCTCATTACGTGAGGTCTCTTAAGGGCTTTTGGTTTGATGCTTTCGTCATTCTTCCCGTTCCTC AGGCTGTATTTTGGTTACTTGTACCGAAATTAATCAGAGAAGAGCAGATTAAGCTCATAATGACAATACTTTTGTTGATCTTCTTGTTCCAATTCCTCCC TAAGGTGTACCACTGCATATGCTTGATGAAAAGAATGCAAAAGGTCACAGGTTATATATTTGGCACCATTTGGTGGGGCTTCGGCCTTAATCTCATTGCC TACTTCATTGCCTCTCATGTTGCAGGTGGATGTTGGTATGTCCTCGCAATACAACGCGTTGCTTCATGCCTCAAGCAGAGTTGTGAGAGTAGGCCTAATT GTGATCTCTCTTTGGCTTGCTCGGAGGAGGTTTGCTATCAGTTCCTGTTACGAGCAGGCACAATTGGAAATCCATGCGTTGGTAACACAACACATACTGT TAGAAAGCCTATGTGCCTGGATGTTAATGGAGCATTCAATTATGGGATTTACAAGTGGGCTCTTCCAGTCATTTCTAGCAATTCTTTGTCCGTGAAAATT CTTTATCCCATTTTCTGGGGTTTAATGACCCTCAGCACCTTTGGCAATGATCTTGAACCAACAAGTCACTGGCTAGAAGTAATCTTCAGTATATGTATTG TTCTCAGTGGTTTAATGCTCTTCACTCTACTGATTGGGAACATCCAGGTGTTCTTGCACGCGGTCATGGCAAAGAAGAGAAAAATGCAGCTGAGATGCAG AGATATGGAATGGTGGATGAGGAGGAGACAGTTGCCTTCTCGTTTGAGACAGAGAGTTCGCCATTATGAACGGCAGAGATGGGCAACCATGGGAGGTGAA GATGAGATAGAACTAATCAAAGACTTACCTGAAGGACTCCGGAGAGATATCAAGCGCTATCTTTGCCTAGATCTTATCAAGAAGGTACCTTTGTTCCACA ACCTGGATGATCTTATTCTTGACAACATCTGTGATCGGGTTAAGCCCCTTGTTTTTTCTAAAGATGAGAAGATAATCAGAGAAGGAGACCCAGTGCAAAG GATGGTGTTCATTGTTCGTGGGCGTATAAGGAGTAGCCAGACTCTTAGCAAAGGCATGGTGGCAACTAGTGTGCTTGAGCCAGGAGGCTTCCTGGGTGAC GAGCTGCTATCCTGGTGTCTTCGCCGTCCATTCATAGACCGACTTCCAGCCTCATCAGCGACATTTGCTTGTATTGAATCGACAGAAGCATTTGGTCTTG ATGCAAACCATCTTCGGTACATCACAGATCACTTCCGCTACAAATTTGCCAATGAAAGACTTAAGAGAACTGCAAGATATTACTCATCAAACTGGAGAAC ATGGGCAGCAGTCAATATACAATTCGCTTGGCGACGTTACAGAATGAGGACTAGGGGACCGGTGATTCCTGTAACAGAAAGTGGAGGTACTGACCGCCGG CTCCTGCAGTATGCTGCAATGTTCATGTCAATCAGGCCACACGACCACCTTGAATAA
AA sequence Show only first row Show all	>Potri.017G089800.1 pacid=42813132 polypeptide=Potri.017G089800.1.p locus=Potri.017G089800 ID=Potri.017G089800.1.v4.1 annot-version=v4.1 MPSQPNSHFSLPRWIGLLCHKNSQSETGDNSDNSNLNSTNNIDDSNPISNSIECYACTQVGVPVFHSTSCDQAHQPEWEASAGSSLVPIKNRLGSRKSPA NRAQSRRPAGPLGTVLDPRSKRVQKWNRAFLLARGMALAVDPLFFYALSIGRNGAPCLYMDGGLAAIVTVLRTSVDAIHLCHLWLQFRLAYVSRESLVVG CGNLVWDARAIASHYVRSLKGFWFDAFVILPVPQAVFWLLVPKLIREEQIKLIMTILLLIFLFQFLPKVYHCICLMKRMQKVTGYIFGTIWWGFGLNLIA YFIASHVAGGCWYVLAIQRVASCLKQSCESRPNCDLSLACSEEVCYQFLLRAGTIGNPCVGNTTHTVRKPMCLDVNGAFNYGIYKWALPVISSNSLSVKI LYPIFWGLMTLSTFGNDLEPTSHWLEVIFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRHYERQRWATMGGE DEIELIKDLPEGLRRDIKRYLCLDLIKKVPLFHNLDDLILDNICDRVKPLVFSKDEKIIREGDPVQRMVFIVRGRIRSSQTLSKGMVATSVLEPGGFLGD ELLSWCLRRPFIDRLPASSATFACIESTEAFGLDANHLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVIPVTESGGTDRR LLQYAAMFMSIRPHDHLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15410		ATCNGC2, DND1	DEFENSE NO DEATH 1, CYCLIC NUC...		Potri.017G089800 [exp]	0	1
AT2G39840		TOPP4	type one serine/threonine prot...		Potri.008G166300 [exp]	3.46	0.8474
AT3G17210		ATHS1	A. THALIANA HEAT STABLE PROTEI...		Potri.010G150800 [exp]	3.87	0.7918	Pt-SP1.1
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Potri.007G078100 [exp]	8.00	0.8185	Pt-BRI1.2
AT5G62570			Calmodulin binding protein-lik...		Potri.012G077000 [exp]	8.48	0.7848
AT5G66900			Disease resistance protein (CC...		Potri.007G039300 [exp]	16.97	0.7448
AT4G21620			glycine-rich protein (.1.2)		Potri.011G045000 [exp]	30.49	0.7192
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.001G175700 [exp]	35.32	0.7184	PtrPDR12
AT4G19840		AtPP2A-1, ATPP2...	phloem protein 2-A1 (.1)		Potri.012G120400 [exp]	38.96	0.7475
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Potri.015G060400 [exp]	39.42	0.7336
AT1G64700			unknown protein		Potri.001G448500 [exp]	43.26	0.7384

Compare expression of checked genes

Potri.017G089800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.