Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15410 911 / 0 ATCNGC2, DND1 DEFENSE NO DEATH 1, CYCLIC NUCLEOTIDE GATED CHANNEL 2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, Cyclic nucleotide-regulated ion channel family protein (.1.2) AT5G54250 552 / 0 HLM1, DND2, ATCNGC4 DEFENSE, NO DEATH 2, cyclic nucleotide-gated cation channel 4 (.1.2.3) AT2G24610 398 / 9e-129 ATCNGC14 cyclic nucleotide-gated channel 14 (.1) AT2G28260 376 / 9e-121 ATCNGC15 cyclic nucleotide-gated channel 15 (.1) AT5G14870 375 / 6e-120 ATCNGC18 cyclic nucleotide-gated channel 18 (.1) AT1G01340 374 / 1e-119 ACBK1, ATCNGC10 cyclic nucleotide gated channel 10 (.1.2) AT5G53130 374 / 2e-119 ATCNGC1, CNGC1 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) AT1G19780 372 / 1e-118 ATCNGC8 cyclic nucleotide gated channel 8 (.1) AT4G01010 370 / 2e-118 ATCNGC13 cyclic nucleotide-gated channel 13 (.1) AT4G30360 368 / 3e-117 ATCNGC17 cyclic nucleotide-gated channel 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G089800 [exp] 991 / 0 AT5G15410 1005 / 0.0 DEFENSE NO DEATH 1, CYCLIC NUCLEOTIDE GATED CHANNEL 2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, Cyclic nucleotide-regulated ion channel family protein (.1.2) Potri.001G407800 [exp] 573 / 0 AT5G54250 972 / 0.0 DEFENSE, NO DEATH 2, cyclic nucleotide-gated cation channel 4 (.1.2.3) Potri.018G097600 [exp] 382 / 4e-123 AT4G30360 1015 / 0.0 cyclic nucleotide-gated channel 17 (.1) Potri.003G183000 [exp] 377 / 2e-120 AT1G19780 893 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.001G043900 [exp] 375 / 1e-119 AT1G19780 967 / 0.0 cyclic nucleotide gated channel 8 (.1) Potri.018G106100 [exp] 371 / 2e-118 AT5G57940 1030 / 0.0 cyclic nucleotide gated channel 5 (.1.2.3) Potri.009G010700 [exp] 370 / 4e-118 AT2G28260 1052 / 0.0 cyclic nucleotide-gated channel 15 (.1) Potri.012G002200 [exp] 369 / 9e-118 AT5G53130 1087 / 0.0 CYCLIC NUCLEOTIDE-GATED CHANNEL 1, cyclic nucleotide gated channel 1 (.1) Potri.014G097900 [exp] 369 / 1e-117 AT1G01340 901 / 0.0 cyclic nucleotide gated channel 10 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030698 [exp] 779 / 0 AT5G15410 854 / 0.0 DEFENSE NO DEATH 1, CYCLIC NUCLEOTIDE GATED CHANNEL 2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, Cyclic nucleotide-regulated ion channel family protein (.1.2) Lus10005221 [exp] 612 / 0 AT5G15410 680 / 0.0 DEFENSE NO DEATH 1, CYCLIC NUCLEOTIDE GATED CHANNEL 2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, Cyclic nucleotide-regulated ion channel family protein (.1.2) Lus10004509 [exp] 535 / 0 AT5G54250 948 / 0.0 DEFENSE, NO DEATH 2, cyclic nucleotide-gated cation channel 4 (.1.2.3) Lus10019983 [exp] 388 / 9e-125 AT4G30360 1000 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10020122 [exp] 387 / 1e-124 AT2G24610 879 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10015510 [exp] 384 / 4e-123 AT4G30360 1004 / 0.0 cyclic nucleotide-gated channel 17 (.1) Lus10021461 [exp] 382 / 6e-123 AT2G28260 1029 / 0.0 cyclic nucleotide-gated channel 15 (.1) Lus10026924 [exp] 384 / 3e-122 AT2G24610 868 / 0.0 cyclic nucleotide-gated channel 14 (.1) Lus10041662 [exp] 380 / 1e-121 AT1G19780 1056 / 0.0 cyclic nucleotide gated channel 8 (.1) Lus10042434 [exp] 378 / 6e-121 AT2G24610 916 / 0.0 cyclic nucleotide-gated channel 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [poplar] [flax] Ion_channel PF00520 [poplar] [flax] Ion_trans Ion transport protein
Representative CDS sequence Show only first row Show all	>Potri.017G089900.5 pacid=42813129 polypeptide=Potri.017G089900.5.p locus=Potri.017G089900 ID=Potri.017G089900.5.v4.1 annot-version=v4.1 ATGTCGTTCTCTCTCTCTAGCTGGTTTCGACAAAGTAGAGGTAGTGTCAAGTATTGCAATGAAAGCAAACACAGCGGCAGCGGCAGCTCCAGCAACAATG CTGTTTTCGATTCCACGGAATGTTATGCTTGCACTCAGGTTGGTGTCCCTGTGTTTCACTCCACAAGCTGTGACAGTGTCCACCAACCCGAATGGCAAGC CTTAGCTGGATCCTCCCTCGTACCTATCCATGCCAAATCCGATCCGATATCCAAACCTGCCCGCTGTCAAACCCCGAACACAAAGGGCCCGTTTGGGTCC ATCCTGGATCCACGTAGCAAGTGGGTCAAGAAATGGAATAGGGTGCTGCTGCTGACCCGTGGCATTGCGCTGGCCATTGATCCTCTTTTCTTCTACGCAT TGTCACTGTCGATTGGAAAAGGTGGGGCCCCTTGTTTGTATGTGAATATTGGGTTTGCAGCAATCGTGACAGTTGCTCGTTCGTGCGTGGATGCGGTGCA TCTTTGGCATCTATGGCTGCAATTCAGGCTGGCGTACGTGTCGAGGGAGTCCCTTGTTTTTGGGTGTGGGAAACTCGTGTGGAACGCACGTGCCATTGCT TATCATTATGTGAGGTCACTGAAAGGATTTTGGTTCGATGTTTTTGTTATCCTGCCGATCCCCCAGGCAATATTTTGGTTGCTGGTACCAAAACTAATAA GGGAAGAAAAGATTAAGCAGGTCTTGACGATGTTATTAGTGACTTTCTCATTCCAATTCCTTCCCAAGGTCTACCACAGCTTTTGCTTGGCTAGAAGAAT GCGGAAAGTCACAGGTTATATATTTGGCACAATTTGGTGGGGTTTTGGACTCAATCTCGTTGCCTACCTAATTGCCTCTCATGTCACAGGAGGATGCTGG TATGTTCTTGCAACAGAACGAGTTGCGACATGTCTCAAGAAACAGTGTGAAAGAAATGGAAACTGCGATCTCACTTTGCAATGCTCGATGAATGTTTGCT ATCAGTTCATGTATCCAGCAGATAACTATGGAAACCCTTGTGGCAGAAACTCAACATGGATTGCTAAGCCGTTGTGCCTGGATGATAATGGACCATTCAA TTATGGGATTTATTCGCCAGCTCTTCTAGTTGTATCCAGCAATTCTCTAGCAGTCAAGATCCTTTATCCCATATTCTGGGGCTTGTTAAACCTTAGCTCT TTCGGCAACGAACTCGCTCCAACAAGTAACTTGGTAGAAGTGATGTTCAGTATATACATTGTGCTGTGTGGTTTCACTCTTTTCACTTTACTGATAGGAA ACATCCAGGTATTTTTGCATGTGGTCATGGCAAAGAATAAAAAGATGCAGCTAAGACGCCAAGATGTGGAATGGTGGATGAGGAGAAGACAGTTGCCAAC TGGTTTAAGACAAAGATTTCGACATTTCGAACGCCAAAAATGGAGAGTCATGGGAGGAGAGGACGAGATGAGTTGGATTGAAGAACTGCCCGAAGGACTC CGGAGAGACATTAAACGCTATCTTTGCCTAGACCTCATAAAAAAGGTGCCTTTGTTTCACAACTTGGATGATCTTATCCTTGACAACATCTGTGATCGTG TCAAGCTCCTTGTCTACTCAAAAGATGAAAAGATTTTAAGAGAAGGAGACCCTGTGCTAAGGATGGTTTTTATTGTGCACGGACGTGTGAAATACAGCCA ATGCCTTAGCAAAGGCATGGTAGCCACAAGTGTGCTTGAGCCAGGAGGCTTTTTAGGTGATGAGCTGCTCTCGTGGTGCCTTCGCCGCCCATTTATAGAC CGCCTCCCAGCCTCATCCGCAACTTTTGTCTGTATGGAACCAACAGAAGCATTTGTTCTGGATGCATATGATCTGAGATATATCTCAGAACACTTCAGGT ACAGATTTGCCAGCAAGAGACTCAAGCGAACAATGAGATATTACTCGTCCAATTGGCGAACATGGGCAGCCGTGAACATTCAATTTGCTTGGCGACGATA CAGGATTAGGAAGAGGGGACTAGCGACTCCTGACATGGTAAATGTAAGCATGGAGAACCGTCTTCGGCTGTGTGCTGCAATGTTCATGTCGCTGAGGCCA CATGACCACTTCCAATAA
AA sequence Show only first row Show all	>Potri.017G089900.5 pacid=42813129 polypeptide=Potri.017G089900.5.p locus=Potri.017G089900 ID=Potri.017G089900.5.v4.1 annot-version=v4.1 MSFSLSSWFRQSRGSVKYCNESKHSGSGSSSNNAVFDSTECYACTQVGVPVFHSTSCDSVHQPEWQALAGSSLVPIHAKSDPISKPARCQTPNTKGPFGS ILDPRSKWVKKWNRVLLLTRGIALAIDPLFFYALSLSIGKGGAPCLYVNIGFAAIVTVARSCVDAVHLWHLWLQFRLAYVSRESLVFGCGKLVWNARAIA YHYVRSLKGFWFDVFVILPIPQAIFWLLVPKLIREEKIKQVLTMLLVTFSFQFLPKVYHSFCLARRMRKVTGYIFGTIWWGFGLNLVAYLIASHVTGGCW YVLATERVATCLKKQCERNGNCDLTLQCSMNVCYQFMYPADNYGNPCGRNSTWIAKPLCLDDNGPFNYGIYSPALLVVSSNSLAVKILYPIFWGLLNLSS FGNELAPTSNLVEVMFSIYIVLCGFTLFTLLIGNIQVFLHVVMAKNKKMQLRRQDVEWWMRRRQLPTGLRQRFRHFERQKWRVMGGEDEMSWIEELPEGL RRDIKRYLCLDLIKKVPLFHNLDDLILDNICDRVKLLVYSKDEKILREGDPVLRMVFIVHGRVKYSQCLSKGMVATSVLEPGGFLGDELLSWCLRRPFID RLPASSATFVCMEPTEAFVLDAYDLRYISEHFRYRFASKRLKRTMRYYSSNWRTWAAVNIQFAWRRYRIRKRGLATPDMVNVSMENRLRLCAAMFMSLRP HDHFQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15410		ATCNGC2, DND1	DEFENSE NO DEATH 1, CYCLIC NUC...		Potri.017G089900 [exp]	0	1
AT5G27730			Protein of unknown function (D...		Potri.005G025200 [exp]	1.73	0.9153
AT3G18440		ATALMT9	aluminum-activated malate tran...		Potri.010G127400 [exp]	1.73	0.9037
AT5G05480			Peptide-N4-(N-acetyl-beta-gluc...		Potri.008G072400 [exp]	2.82	0.8348
AT1G15380		GLYI4	glyoxylase I 4, Lactoylglutath...		Potri.007G015100 [exp]	3.46	0.8997
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Potri.001G251200 [exp]	3.46	0.9085
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Potri.009G045800 [exp]	5.00	0.8953
AT1G80160		GLYI7	glyoxylase I 7, Lactoylglutath...		Potri.005G117000 [exp]	5.29	0.8395
AT3G49190			O-acyltransferase (WSD1-like) ...		Potri.017G010300 [exp]	7.34	0.8707
AT2G16980			Major facilitator superfamily ...		Potri.005G245900 [exp]	7.74	0.8164
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Potri.013G002200 [exp]	9.94	0.8334	SOYAP2.2

Compare expression of checked genes

Potri.017G089900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.