Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29270 281 / 2e-95 RING/U-box superfamily protein (.1.2) AT1G69330 244 / 8e-81 RING/U-box superfamily protein (.1) AT1G74370 210 / 1e-67 RING/U-box superfamily protein (.1) AT1G21651 50 / 1e-06 zinc ion binding (.1) AT1G21650 50 / 1e-06 SECA2 Preprotein translocase SecA family protein (.1.2.3) AT5G13530 46 / 2e-05 KEG KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) AT2G40770 44 / 9e-05 zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G125400 [exp] 434 / 1e-155 AT3G29270 283 / 4e-96 RING/U-box superfamily protein (.1.2) Potri.012G067200 [exp] 285 / 4e-97 AT3G29270 270 / 3e-91 RING/U-box superfamily protein (.1.2) Potri.010G161100 [exp] 252 / 5e-84 AT1G69330 263 / 5e-88 RING/U-box superfamily protein (.1) Potri.019G066500 [exp] 49 / 2e-06 AT1G21651 716 / 0.0 zinc ion binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005220 [exp] 331 / 6e-115 AT3G29270 317 / 3e-109 RING/U-box superfamily protein (.1.2) Lus10030699 [exp] 313 / 5e-108 AT3G29270 310 / 5e-107 RING/U-box superfamily protein (.1.2) Lus10003473 [exp] 281 / 4e-95 AT3G29270 296 / 2e-101 RING/U-box superfamily protein (.1.2) Lus10015732 [exp] 274 / 2e-92 AT3G29270 296 / 2e-101 RING/U-box superfamily protein (.1.2) Lus10004666 [exp] 206 / 1e-65 AT1G69330 272 / 1e-91 RING/U-box superfamily protein (.1) Lus10026648 [exp] 202 / 1e-61 AT1G69330 275 / 2e-89 RING/U-box superfamily protein (.1) Lus10028560 [exp] 51 / 6e-07 AT1G21650 687 / 0.0 Preprotein translocase SecA family protein (.1.2.3) Lus10024135 [exp] 41 / 0.0006 AT5G13530 309 / 2e-96 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13445 [poplar] [flax] zf-RING_UBOX RING-type zinc-finger
Representative CDS sequence Show only first row Show all	>Potri.017G090000.1 pacid=42813626 polypeptide=Potri.017G090000.1.p locus=Potri.017G090000 ID=Potri.017G090000.1.v4.1 annot-version=v4.1 ATGTGGAATTTTGCATCCAAGTGCCTAGCTGGAAGTGTTAGTTTGAACAACTCTCTAAAGCCAGCTCAAGTTCCTTCAGAATACTCAGACGATGAGGCAT CTTCTGTTGTAAGCAGAGAAGAAGGCCTAGAGTGTCCGATATGCTGGGAATCCTTCAACATTGTTGAAAATGTGCCTTATGTTTTATGGTGTGGCCATAC TCTTTGCAAAAATTGCATCCTAGGGCTTCAATGGGCTGTTGTGAAATTCCCTACATTACCAATTCAGCTCCCTCTCTTTATTTCTTGTCCATGGTGCAAT CTGTTATCATTCCGCCTTGTTTATCGAGGGAACCTCAAATTCCCTCGCAAGAATTATTTTCTTCTTTGGATGGTTGAGAGCAAGAATGGTGATAGAGAGA AGTCTCATGGCACCTTCTGTGAAGATCAACAACCCCACTGGTCATCGGACAGTAATTTAGCCCTTGGAAATCAGGCAAGCCGTGGGAACATCAGGAGGGG ACAATATGTTCATCATGCTGAACCATCAGAGGCAAACCATGATCATAATCATGTCAACAGTTACCTCAATGTGAGGAGAATACATTCCTCCCTTCAGAAG TCACTGGTTTTCTTTGTTCATCTGACAGCAAAGTTCCCATTGGTCATCATATTCCTTTTGATCATCTTATATGCAATACCTGCCAGTGCAGCCATTTTGG CCCTGTACATTCTTATCACTGTTTTGTTTGCTCTCCCATCATTTCTCATTCTGTACTTTGCTTATCCTAGTTTGGATTGGCTTGTCAGAGAAATCATCAC TTGA
AA sequence Show only first row Show all	>Potri.017G090000.1 pacid=42813626 polypeptide=Potri.017G090000.1.p locus=Potri.017G090000 ID=Potri.017G090000.1.v4.1 annot-version=v4.1 MWNFASKCLAGSVSLNNSLKPAQVPSEYSDDEASSVVSREEGLECPICWESFNIVENVPYVLWCGHTLCKNCILGLQWAVVKFPTLPIQLPLFISCPWCN LLSFRLVYRGNLKFPRKNYFLLWMVESKNGDREKSHGTFCEDQQPHWSSDSNLALGNQASRGNIRRGQYVHHAEPSEANHDHNHVNSYLNVRRIHSSLQK SLVFFVHLTAKFPLVIIFLLIILYAIPASAAILALYILITVLFALPSFLILYFAYPSLDWLVREIIT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G29270			RING/U-box superfamily protein...		Potri.017G090000 [exp]	0	1
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Potri.018G107300 [exp]	1.00	0.7509	EIF.5
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Potri.015G101500 [exp]	26.90	0.7476
AT5G32450			RNA binding (RRM/RBD/RNP motif...		Potri.001G070200 [exp]	27.76	0.7498
AT5G54540			Uncharacterised conserved prot...		Potri.011G130000 [exp]	41.13	0.6602
AT3G10572		APEM9	ABERRANT PEROXISOME MORPHOLOGY...		Potri.006G078700 [exp]	48.43	0.6865
AT4G34560			unknown protein		Potri.009G119000 [exp]	49.11	0.7264
AT4G31410			Protein of unknown function (D...		Potri.006G275400 [exp]	50.67	0.6196
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Potri.004G050900 [exp]	62.20	0.6881
					Potri.010G132000 [exp]	62.32	0.7121
AT5G54660			HSP20-like chaperones superfam...		Potri.011G131800 [exp]	69.33	0.7090

Compare expression of checked genes

Potri.017G090000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.