Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01060 674 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G125301 [exp] 179 / 3e-54 AT3G01060 136 / 4e-39 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030700 [exp] 655 / 0 AT3G01060 684 / 0.0 unknown protein Lus10005219 [exp] 596 / 0 AT3G01060 624 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14234 [poplar] [flax] DUF4336 Domain of unknown function (DUF4336)
Representative CDS sequence Show only first row Show all	>Potri.017G090100.1 pacid=42814270 polypeptide=Potri.017G090100.1.p locus=Potri.017G090100 ID=Potri.017G090100.1.v4.1 annot-version=v4.1 ATGGTGGCAGCCATTACCATTTCTTGCCCAAAATCCAGAGTCCTACAGAATCCAACCACTTTAAAAGACTCAAGTTCTAGTTTTTTTTGTGGGTCCTTGA AGGGTGTTCCTTTTCAGTTAAAACCCAGAAACAAGAGACCAGACAGCTTCAGCTTGGTGGTTGCTGCTGCAAGTAACACCCCTACCACAACGAGCACTAG CAGCAGCGGCGGTGGTGGTGGCAGGTTTTACCTAAACTTTACTGGGTTTCCTTTCCCTCTTGGTCCTTTCCTTAATAGGCGCACTATAAGGACTGAGGCT GTGAAGAGTTGTATATGGCTATTCGAACAAGAACAAGCATTAGGCTTCAGCAGTGTATCAACAAACATTCGAATGACAGTCATCAAACTCAAATCTGGAG GATTATGGGTCCACGCACCCATTGCTCCAACAGAGGAGTGTATTCAGCTTTTGAAGGAGTTGGGAGCTCCAGTCGAATACATTGTACTGCCTACATTTGC TTATGAACATAAAATCTTTGTTGGCCCATTTTCGAGAAAATTTCCACGGGCCCAAATATGGGTGGCACCAAGGCAGTGGAGCTGGCCCCTGAATTTGCCA CTTGAGTTCTTCGGAATTTTTCGTGCCAAAACCTTGACGGATGAGGATATGTCTACCCCTTGGGCTGATGAGATTGAACAAAAAGTCCTAAGCTCGCCCG AAGTTGGAATTGGACCGTATGTCGAGGTAGCTTTCTATCACAAGCGTTCAAGATCACTACTGGTAACAGATGCTGTGATTTTTGTGCCAAGAATGCCACC TGAATGTATTGGCAAAGAATCCTTGCTAGCATCAGCAAAGAATGGCTTGGCTGTAAAAATTCTTAGTAAAGGGAAGGAAGTCCCTCAGGAACCAGTTGTT GATAACCAGATGAGCCGGCAAAAAGGTTGGGAAAGAATGGTCCTCCAGATCTTGTTTCTTGGTCCTTCTAATCTATTGGAACCTAATGCTAGCTTTGCTC AGATGTCACAAAAGTTGATTGTTTCACCCATTGTGAAGACTTTGGTCTTCAGCAAAGTTCCCGAAAAGGTCAGGGATTGGATTGATAGTATTGTCCGAGA CTGGAAATTCAAGAGGATAATTCCTGCTCATTTTGCTGCTCCAATAAACGCAGGTAGGTCTGAATTTTTAGCTGCATTTGCATTCCTAGATGACCTCTTG GGAGAGCGTTATGTTACTCGGCCTTCACTTTCTCTTCTATTTACATCAATTATGGGCAAGGCAGCCAGTTACTTCCCACCAGATGACATGAAGACCTTAT CATCTCTTGATCAGTTTTTAGTCTCAGTGGGAGCAGTGAAGAAGACTGTCTCAGGCAGGAAGAAAACTGCATGA
AA sequence Show only first row Show all	>Potri.017G090100.1 pacid=42814270 polypeptide=Potri.017G090100.1.p locus=Potri.017G090100 ID=Potri.017G090100.1.v4.1 annot-version=v4.1 MVAAITISCPKSRVLQNPTTLKDSSSSFFCGSLKGVPFQLKPRNKRPDSFSLVVAAASNTPTTTSTSSSGGGGGRFYLNFTGFPFPLGPFLNRRTIRTEA VKSCIWLFEQEQALGFSSVSTNIRMTVIKLKSGGLWVHAPIAPTEECIQLLKELGAPVEYIVLPTFAYEHKIFVGPFSRKFPRAQIWVAPRQWSWPLNLP LEFFGIFRAKTLTDEDMSTPWADEIEQKVLSSPEVGIGPYVEVAFYHKRSRSLLVTDAVIFVPRMPPECIGKESLLASAKNGLAVKILSKGKEVPQEPVV DNQMSRQKGWERMVLQILFLGPSNLLEPNASFAQMSQKLIVSPIVKTLVFSKVPEKVRDWIDSIVRDWKFKRIIPAHFAAPINAGRSEFLAAFAFLDDLL GERYVTRPSLSLLFTSIMGKAASYFPPDDMKTLSSLDQFLVSVGAVKKTVSGRKKTA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01060			unknown protein		Potri.017G090100 [exp]	0	1
AT1G42970		GAPB	glyceraldehyde-3-phosphate deh...		Potri.005G254100 [exp]	1.00	0.9831	Pt-GAPB.2
AT1G55480		ZKT	protein containing PDZ domain,...		Potri.003G222200 [exp]	2.00	0.9821
AT1G06110		SKIP16	SKP1/ASK-interacting protein 1...		Potri.015G078100 [exp]	2.23	0.9788
AT1G62750		ATSCO1, ATSCO1/...	SNOWY COTYLEDON 1, Translation...		Potri.003G113500 [exp]	4.00	0.9796
AT4G28740			unknown protein		Potri.014G194500 [exp]	4.89	0.9728
AT4G03280		PGR1, PETC	PROTON GRADIENT REGULATION 1, ...		Potri.019G118500 [exp]	5.47	0.9818	PETC.1
AT3G55800		SBPASE	sedoheptulose-bisphosphatase (...		Potri.008G063800 [exp]	8.12	0.9774
AT2G05620		PGR5	proton gradient regulation 5 (...		Potri.010G066900 [exp]	8.94	0.9646	Pt-PGR5.1
AT1G64680			unknown protein		Potri.001G083300 [exp]	10.90	0.9770
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Potri.008G187400 [exp]	11.40	0.9687	Pt-AOAT1.2

Compare expression of checked genes

Potri.017G090100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.