Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39380 134 / 3e-33 Plant calmodulin-binding protein-related (.1) AT5G15430 123 / 9e-30 Plant calmodulin-binding protein-related (.1) AT5G61260 97 / 4e-21 Plant calmodulin-binding protein-related (.1) AT5G07820 82 / 4e-16 Plant calmodulin-binding protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G049600 [exp] 118 / 4e-28 AT5G39380 94 / 2e-20 Plant calmodulin-binding protein-related (.1) Potri.012G067100 [exp] 114 / 8e-27 AT5G07820 96 / 4e-21 Plant calmodulin-binding protein-related (.1) Potri.018G005500 [exp] 59 / 1e-08 AT5G10660 61 / 8e-10 calmodulin-binding protein-related (.1.2) Potri.006G274600 [exp] 57 / 2e-08 AT5G24880 60 / 2e-09 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030701 [exp] 173 / 8e-46 AT5G39380 132 / 6e-33 Plant calmodulin-binding protein-related (.1) Lus10034717 [exp] 99 / 3e-23 AT5G39380 86 / 1e-19 Plant calmodulin-binding protein-related (.1) Lus10021647 [exp] 102 / 3e-22 AT5G15430 95 / 5e-20 Plant calmodulin-binding protein-related (.1) Lus10000141 [exp] 67 / 3e-11 AT5G15430 57 / 1e-08 Plant calmodulin-binding protein-related (.1) Lus10003472 [exp] 67 / 3e-11 AT5G15430 58 / 2e-08 Plant calmodulin-binding protein-related (.1) Lus10000209 [exp] 64 / 4e-10 AT5G15430 58 / 1e-08 Plant calmodulin-binding protein-related (.1) Lus10015733 [exp] 64 / 5e-10 AT5G15430 58 / 1e-08 Plant calmodulin-binding protein-related (.1) Lus10042442 [exp] 54 / 4e-07 AT5G10660 61 / 8e-10 calmodulin-binding protein-related (.1.2) Lus10026227 [exp] 54 / 4e-07 AT5G10660 61 / 7e-10 calmodulin-binding protein-related (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07839 [poplar] [flax] CaM_binding Plant calmodulin-binding domain
Representative CDS sequence Show only first row Show all	>Potri.017G090200.1 pacid=42813170 polypeptide=Potri.017G090200.1.p locus=Potri.017G090200 ID=Potri.017G090200.1.v4.1 annot-version=v4.1 ATGGCTGAGCCAAGCATCAGTCTAGCAGTGACCCCAACAATAGCTGAGGCAGATAGAGGTAATTCAAAAAGAAATTCTATGGGAAAATCAAGTTCGTCGG ATACAAGCAAGGAGATTCTTCCTCACTATCTTCGAGCTTCTACTGGTTCATGTCATGATTTCTGTAAATATGGGAGGAAACATGCATTTGAAGAGAAGGC AAGGTGTTCCTTTCCAAGAAGGATTATAAAGAAACTACCAGATGACCAAAGTTTGGCAGAGTCTCAGACAGAGGACTACAGTACATCAGTGGTGAAGGTC AAATCTAGTCCCAATTCCAAATCTCCCAGTGCTAATAGTCCTGAGATCATCAAACGAGAGGTGTCAACCAAATCAGTTGTCAGCCAAACTCCACTGTTCA AAGAAGTCCTGACTAAGAGGATGACGCCAGCAGGTTTATTAGCAAGGTCTTTTGACAGCCAAAGTTCGATGTTAAGAGAAGCTCTGGCCAAGAAAGAATC ATCAGCTGGGTCACCTCTGACAAAATCATTTGATGGCCGAAGTCCAGTTTCAAGAGAAGTTCTGGCCAAGAAAAAATCATCAGCTGGGTCACCTCTGACA AAATCATTTGATGGCCGAAGTCCAGTTTCAAGTGAAGTTCTGTTCAAGAAAATGACATTGACACAGGAAGTGTCAACTAAATCAGCTGACAGCCAAGGTT CAGGGCCAAGTGAGATTTGGATGAGGAAGAAGACATCAGCTGTGCGGAGGAAGGAGAATTCAAAAATCAATTCATCAACTAAATTAGATGGCGGCCAAGG TTCAGGGTCAAGTGAAATTTGGATGAAGACAAAGACAACAGCTGTTGGGAGGAAGAAGGATTCAGAGGTCAATTCATACCCAAGCATCACTAGGCAGGAT TTGGCATCATCTTCTGAAAAACCAGGGGTCTCTATGAAACAAGTGTTGTCGAAAGCTAAAGAAGTAAAATTATCTGCAAAATACGCTAGTACTTTGAATC CAAAATCGTCTTCGCCTGATGCTTCAAGAGTTTTTGGTGCCAGAAGAAATGGTGACATCAAGATCAAACGGCGTACAGGGACCTCCAAACCAGTTGCAAA GAATTTACAAGCATCCCCAAGGGCTTCATTTTCTCCTAGAAGGTCAGTCAGTGGTGTTGCTAGAGGACTAGCATCCCCACGAGCTTCATTGTCCAGTAAA CCTTCTCCTATTAGAATTGCATGCCTGAATGAAAAGAAGAATAGGAGCTTGAAACTCACGCCTCAGACTAAAGAAATTAATGATAAGCAGCACAAGAATA AGAATTCCCATAAGAATGCCGATCCTGTTCAACCCGATGGCAAACTTGAAGAATCCAACGGTGACACGATCCAGGAGAAAACGTTGTATGTCATCAAGGT GAAAGCTGACAACAAATATGTGGAGTCTGATCACAATGAGAATGTTTCTGTCGAGGCATCACCACCTCTGCTGTCTTCACTAAAGTCTCCATCCCTCCCA AAATCTATCTCCTCCATGTCCCATAGTGAAAAAGATGAAGAAGAGTCTGAGTATACTGTGACAGAAGCAGAAGATGACACTTCCTCTGAATACGATGAAA CTGAGTGCATTGAAGAGACAGAGACTTTGGAAGCAGAACACAGAGGGAGGAATAGAAAGTCTGGGATGGTTCTTTCTGAGGACAAAGATGGCAACCCTGT GAAATTACGTTTCAGGAGGGGAAGGGTGATTGATATTCTGTCTGAGAATAATAGTCCAAGGAGGTTGAAGTTCAGGCGAGGAAGAGTGTTGGGGGATAAC CAAAATCTCAAAGCTGATGGCCGAAGAAGCTTCAAGAGGAGAGGAGCTGATGGTGATGTGATTGACAGCAAACATGATTCAGGAAAATTTGTTTTGAGGC ATCAAGATGTTCATGGAAAGAAAGATGCGCAGGGTCTGTTTAATAATGTCATAGAAGAAACAGCAAGTAAACTTGTAGAGACAAGGAAAAGTAAGGTTAA GGCCTTGGTGGGTGCTTTCGAGACGGTAATCTCCCTGCAAGATGGCAAACCCTCTGCAAATGCTGCTTCTTGA
AA sequence Show only first row Show all	>Potri.017G090200.1 pacid=42813170 polypeptide=Potri.017G090200.1.p locus=Potri.017G090200 ID=Potri.017G090200.1.v4.1 annot-version=v4.1 MAEPSISLAVTPTIAEADRGNSKRNSMGKSSSSDTSKEILPHYLRASTGSCHDFCKYGRKHAFEEKARCSFPRRIIKKLPDDQSLAESQTEDYSTSVVKV KSSPNSKSPSANSPEIIKREVSTKSVVSQTPLFKEVLTKRMTPAGLLARSFDSQSSMLREALAKKESSAGSPLTKSFDGRSPVSREVLAKKKSSAGSPLT KSFDGRSPVSSEVLFKKMTLTQEVSTKSADSQGSGPSEIWMRKKTSAVRRKENSKINSSTKLDGGQGSGSSEIWMKTKTTAVGRKKDSEVNSYPSITRQD LASSSEKPGVSMKQVLSKAKEVKLSAKYASTLNPKSSSPDASRVFGARRNGDIKIKRRTGTSKPVAKNLQASPRASFSPRRSVSGVARGLASPRASLSSK PSPIRIACLNEKKNRSLKLTPQTKEINDKQHKNKNSHKNADPVQPDGKLEESNGDTIQEKTLYVIKVKADNKYVESDHNENVSVEASPPLLSSLKSPSLP KSISSMSHSEKDEEESEYTVTEAEDDTSSEYDETECIEETETLEAEHRGRNRKSGMVLSEDKDGNPVKLRFRRGRVIDILSENNSPRRLKFRRGRVLGDN QNLKADGRRSFKRRGADGDVIDSKHDSGKFVLRHQDVHGKKDAQGLFNNVIEETASKLVETRKSKVKALVGAFETVISLQDGKPSANAAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39380			Plant calmodulin-binding prote...		Potri.017G090200 [exp]	0	1
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.015G129400 [exp]	3.87	0.9381	Pt-FLA14.7
AT1G52780			Protein of unknown function (D...		Potri.001G175600 [exp]	4.47	0.9208
AT4G00440			Protein of unknown function (D...		Potri.002G160000 [exp]	6.48	0.8963
AT3G01780		TPLATE	ARM repeat superfamily protein...		Potri.001G334300 [exp]	6.70	0.9067
AT1G09610			Protein of unknown function (D...		Potri.004G226800 [exp]	10.67	0.9162
AT1G63300			Myosin heavy chain-related pro...		Potri.001G106700 [exp]	16.00	0.8817
AT5G17910			unknown protein		Potri.013G068800 [exp]	16.43	0.8716
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Potri.006G131000 [exp]	18.65	0.9078
AT2G23360			Plant protein of unknown funct...		Potri.005G140300 [exp]	20.39	0.8945
AT1G68200	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.010G118700 [exp]	20.73	0.8992

Compare expression of checked genes

Potri.017G090200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.