Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29290 559 / 0 EMB2076 embryo defective 2076, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 126 / 3e-30 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 122 / 9e-29 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G02860 121 / 2e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G31850 121 / 3e-28 PGR3 proton gradient regulation 3 (.1) AT1G12620 119 / 6e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74850 117 / 4e-27 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT5G59900 117 / 6e-27 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08610 115 / 6e-27 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 115 / 1e-26 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G124900 [exp] 145 / 3e-36 AT5G65560 909 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G014100 [exp] 136 / 4e-33 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G038400 [exp] 134 / 6e-33 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.016G025600 [exp] 134 / 1e-32 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G193900 [exp] 131 / 2e-31 AT2G31400 1192 / 0.0 genomes uncoupled 1 (.1) Potri.006G015900 [exp] 130 / 2e-31 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046200 [exp] 128 / 5e-31 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G045000 [exp] 127 / 2e-30 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.009G105600 [exp] 127 / 3e-30 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018198 [exp] 439 / 2e-148 AT3G29290 394 / 2e-132 embryo defective 2076, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10025637 [exp] 421 / 8e-142 AT3G29290 383 / 9e-129 embryo defective 2076, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10043417 [exp] 130 / 5e-31 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 123 / 9e-29 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 122 / 1e-28 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021989 [exp] 122 / 2e-28 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 121 / 2e-28 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 120 / 7e-28 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10043434 [exp] 120 / 7e-28 AT5G04810 1108 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10042529 [exp] 119 / 1e-27 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.017G090500.1 pacid=42813960 polypeptide=Potri.017G090500.1.p locus=Potri.017G090500 ID=Potri.017G090500.1.v4.1 annot-version=v4.1 ATGCTAGTTACCATGAAATGGCATGGGCTTGCTTGTCAAAAGGGTGTGTATTTTCCAAACAATGGTAAAGATAGAAATTGTTGTAGAAGTTCTTGCTGTG GTGGATATGGTTGTTCAGCTATGAAAACAAGGAGAATTCATGTGGGAACATGTGAGCTCAATGTGGTTTCCGTGTCAATGAAGGGTCTTACTTGGTTTGG ATGTGTTCGATTGAAGTTGCCTCAGATGGGTTTGCAATTCGGGTCCATTACAATGAGAAATTCGCTGGCTGTATCAGGCGTGGTAGCTTGTAATGAATCT AAGTTGGTTTCCGAAGATAACAGACAAAAAGAATTGATTCGAAGAGGAATAGACCAATTTGATAAGGATCCTCTTGGACAAAAATTACCTCCTTGGGGAA TTGTCAGTGACAATTCTGAGTTGGTTTCTAATGAAAAGGAAGAACAAGACTTGGTTGAGAGTGGAAAAGACCAATTTGACATGGATTCTTGTGGACAGAA TTTGCCACTTCAGCAGGGATCAGATATTAATAATGAAAAAATTGTTCAGTCACCATCACTTTTAAACAATAGGGTTACTGTTAATGAAAGTAGGGTGCAT TTTTTAGAGGAAACTGATGAAAATGAGTTATCAAGAAGGATTTTGATGCTTAGTAGATCTAACAAGATTAGAAGTGCACTGCAGTTGCTTAGGTCCATGG AATTCTCAGGCCTCCAACCTAACAGACATGCTTGTAACTCTCTTCTCTCTTGCCTTATAAGACACGAACTGCATGAGGATGCTTTGAGAGTTTTTGAGTA CATGAAGAAAAATGAGATCACAACAGGCCATGCATATAGCTTAATACTGAAAGCAGTTGCAAGTACCAAGGGTTGTGATTCAGCACTTGATATGTTTACT GAATTGGAAGCATTTTCCAGAGAGAAGAAGGATTTTGATGTAATTGTTTACAACACAATGATATCTGTTTGTGGCAAGGAGAAAAATTGGGTTGAAACTG AAAGAATATGGAGAAGTATGAAGGAAAATGGCTATCATGGAACACAAGTTACTTACTCACTTTTAGTTAGCATTTTTGTTCGTTGCGGTCGGAATGAGCT AGCTCTTGAAGCTTACAGCGAAATGGTTCAAAATGGTTTGAAACCAAGAGAGGATACACTGCATGCTGTTATTGGTGCATGTTCAAAGAAGGGAAATTGG GACTTGGCTCTGAATATCTTCCAAAATATGTTGGATCATGGGCTGAAGCCAAATCTTATTGCATGTAATGCATTGATTAATTTACTTGGGAAAGCAGGGG AAATCAAACTAGCATTTAAGGTCTTTAAAATTCTCAAGTCTTTGGGTCATACACCTGATGAGTACACATGGAATGCATTGCTCAGTGGTCTATACAGGGC AAATCAACATGTTGATGCTCTTCTGCTCTTTGAGAGACTAAAAAGAGAACAAAATTCTCTATTAAATGAACATTTATACAACACTGCTCTGATGTCATGC CAGAAACTCGGTTTATGGGATAGAGCTCTTCAGCTTGTATGGCAGGCGGAAGCTTCTGGGCTTTCAGTTTCAACAGCATCTTATAATCTTGCTATTGGTG CTTGTGAAGTTGCTAGAAAGCCAGAAGTTGCTTTGGAAGTTTATGAGCACATGGTTCACCAGAAGTGCCCTCCAGACACATTTACCTATTTGTCGTTGAT AAGAAGTTGCATTTGGGCATCTCTTTGGGATGAGGTGGAGGAAATACTAGATCAAGTTGCACCAGATGTCTCCCTCTACAATGCTGTAATCCATGGAATG TGCTTAAGAGGCAAGACTGAATCAGCAAAGAAGCTGTACATGAAAATGGGCAAGAGCGGTCTAAAACCAGATGGGGCCTTGATGCTCCAGAACTTGCGGA AGAATTCAACTAAAAGAAGCAGGTTTTCTACCTGCCGTAGATAA
AA sequence Show only first row Show all	>Potri.017G090500.1 pacid=42813960 polypeptide=Potri.017G090500.1.p locus=Potri.017G090500 ID=Potri.017G090500.1.v4.1 annot-version=v4.1 MLVTMKWHGLACQKGVYFPNNGKDRNCCRSSCCGGYGCSAMKTRRIHVGTCELNVVSVSMKGLTWFGCVRLKLPQMGLQFGSITMRNSLAVSGVVACNES KLVSEDNRQKELIRRGIDQFDKDPLGQKLPPWGIVSDNSELVSNEKEEQDLVESGKDQFDMDSCGQNLPLQQGSDINNEKIVQSPSLLNNRVTVNESRVH FLEETDENELSRRILMLSRSNKIRSALQLLRSMEFSGLQPNRHACNSLLSCLIRHELHEDALRVFEYMKKNEITTGHAYSLILKAVASTKGCDSALDMFT ELEAFSREKKDFDVIVYNTMISVCGKEKNWVETERIWRSMKENGYHGTQVTYSLLVSIFVRCGRNELALEAYSEMVQNGLKPREDTLHAVIGACSKKGNW DLALNIFQNMLDHGLKPNLIACNALINLLGKAGEIKLAFKVFKILKSLGHTPDEYTWNALLSGLYRANQHVDALLLFERLKREQNSLLNEHLYNTALMSC QKLGLWDRALQLVWQAEASGLSVSTASYNLAIGACEVARKPEVALEVYEHMVHQKCPPDTFTYLSLIRSCIWASLWDEVEEILDQVAPDVSLYNAVIHGM CLRGKTESAKKLYMKMGKSGLKPDGALMLQNLRKNSTKRSRFSTCRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G29290		EMB2076	embryo defective 2076, Pentatr...		Potri.017G090500 [exp]	0	1
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Potri.003G058700 [exp]	7.21	0.9189
AT3G25430			Polynucleotidyl transferase, r...		Potri.014G177400 [exp]	7.93	0.8905
AT2G13600			Pentatricopeptide repeat (PPR)...		Potri.012G018800 [exp]	11.74	0.9080
AT3G02050		ATKT4, ATKUP3, ...	K+ uptake transporter 3, ARABI...		Potri.014G144900 [exp]	12.00	0.8789	Pt-KUP3.1
AT5G11580			Regulator of chromosome conden...		Potri.018G044400 [exp]	14.31	0.8697
AT5G22660			FBD, F-box, Skp2-like and Leuc...		Potri.001G337200 [exp]	14.69	0.8718
AT4G14000			Putative methyltransferase fam...		Potri.001G321100 [exp]	15.49	0.8856
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Potri.004G002800 [exp]	15.87	0.8745
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.013G058900 [exp]	16.12	0.8905
AT4G12710			ARM repeat superfamily protein...		Potri.014G170100 [exp]	17.66	0.8703

Compare expression of checked genes

Potri.017G090500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.