Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15470 884 / 0 GAUT14 galacturonosyltransferase 14 (.1) AT3G01040 879 / 0 GAUT13 galacturonosyltransferase 13 (.1.2) AT5G54690 545 / 0 IRX8, GAUT12, LGT6 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) AT3G58790 423 / 4e-143 GAUT15 galacturonosyltransferase 15 (.1) AT5G47780 358 / 5e-117 GAUT4 galacturonosyltransferase 4 (.1) AT3G61130 357 / 1e-115 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT3G25140 332 / 1e-107 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT4G38270 334 / 9e-107 GAUT3 galacturonosyltransferase 3 (.1.2) AT2G20810 328 / 4e-106 GAUT10, LGT4 galacturonosyltransferase 10 (.1) AT1G18580 320 / 4e-103 GAUT11 galacturonosyltransferase 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G124500 [exp] 988 / 0 AT5G15470 873 / 0.0 galacturonosyltransferase 14 (.1) Potri.001G416800 [exp] 554 / 0 AT5G54690 851 / 0.0 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) Potri.011G132600 [exp] 548 / 0 AT5G54690 871 / 0.0 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) Potri.014G142000 [exp] 451 / 3e-154 AT3G58790 663 / 0.0 galacturonosyltransferase 15 (.1) Potri.016G001700 [exp] 362 / 9e-118 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.006G001100 [exp] 357 / 7e-117 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.002G151400 [exp] 350 / 4e-113 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.014G073800 [exp] 349 / 2e-112 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.002G246500 [exp] 337 / 2e-109 AT3G25140 912 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013189 [exp] 899 / 0 AT5G15470 952 / 0.0 galacturonosyltransferase 14 (.1) Lus10032990 [exp] 891 / 0 AT3G01040 955 / 0.0 galacturonosyltransferase 13 (.1.2) Lus10030703 [exp] 865 / 0 AT3G01040 926 / 0.0 galacturonosyltransferase 13 (.1.2) Lus10015379 [exp] 792 / 0 AT3G01040 833 / 0.0 galacturonosyltransferase 13 (.1.2) Lus10035836 [exp] 532 / 0 AT5G54690 887 / 0.0 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) Lus10038739 [exp] 363 / 6e-118 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10041389 [exp] 355 / 1e-115 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10009311 [exp] 353 / 2e-114 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10036540 [exp] 355 / 5e-114 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1) Lus10018554 [exp] 333 / 3e-108 AT2G20810 872 / 0.0 galacturonosyltransferase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01501 [poplar] [flax] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Potri.017G090800.2 pacid=42813523 polypeptide=Potri.017G090800.2.p locus=Potri.017G090800 ID=Potri.017G090800.2.v4.1 annot-version=v4.1 ATGCAGCTTCACATCTCGCGTAGCATGAGAAGCATCACTATATCTTCTAGCAGCAACAATGGGTTTATTGACTTAATGAAGATCAAAGTCGCAGCTCGCC ATATCTCTTATAGAACCCTTTTTCATACTATACTCATTCTCGCTTTTTTGTTACCTTTTGTATTCATTCTCACTGCTTTGGTTACCCTTGAAGGAGTCAA CAAGTGTTCCTCATTTGATTGTTTAGGTAGACGGTTAGGACCAAGGCTTCTTGGTAGAGTAGATGATTCAGGGAGGCTCGTTAAAGACTTTTACAAGATA CTCAATCAAGTTAAAAACGAGGAAATCCCAGATGGTGTAAAGCTCCCAGCTTCTTTTAGCCACCTAGTTTCTGAAATGAAGAACAATCAGTATGATGCAA GGACATTTGCATTCATGTTGAGGGCTATGATGGAAAAATTGGAAAGAGAAATTAGGGAATCTAAATTTTCAGAGCTGATGAACAAACACTTTGCTGCAAG TTCCATCCCGAAAAGCATCCACTGTCTCTCTCTACGTCTGACTGATGAATATTCCTCCAATGCTCATGCACGTAAACAATTACCTTCTCCAGAGTTCCTT CCTCTGCTCTCCGACAACTCTTACCACCACTTTGTCCTCTCAACTGATAACATTTTGGCTGCCTCAGTTGTTGTCACTTCTACTATCCAGTCATCTTTAA AGCCTGACAACATAGTTTTTCACATCATCACTGACAAGAAAACCTATGCGGGCATGCACTCATGGTTTGCGCTAAACCCAGTCTCCCCTGCTATTGTGGA AGTGAAAGGTGTTCACCAGTTTGACTGGTTAACAAGAGAGAATGTTCCAGTGCTTGAAGCTGTAGAGAACCATAATGGTATCAGGAATTATTACCATGGG AATCACATTGCAGGGGCAAATCTTAGTGATACAACTCCACGAAGATTTGCTTCAAAATTGCAGGCTAGAAGTCCAAAGTATATATCAATACTCAACCATC TTCGGATATATATACCTGAGCTCTTTCCAAGCCTTGACAAGGTGGTGTTTCTAGATGACGATGTCGTAATCCAGCGTGATTTGTCTCCACTTTGGGAAAT TGACCTTAAGGGAAAAGTCAATGGAGCTGTAGAAACTTGTAAAGGTGAAGATGAGTGGGTAATGTCCAAGCATTTCAAGAATTACTTCAATTTTTCACAT CCCCTCATAGCAAAGAATTTGGACCCTGATGAATGTGCATGGGCATATGGAATGAACATATTTGATCTCCGCGCATGGAGGAAAACAAATATTAGAGAAA CCTACCATTCCTGGCTGAAAGAGAACCTGAAGTCAAACCTGACAATGTGGAAACTCGGAACCCTACCACCTGCTTTGATTGCATTTAAAGGTCATGTTCA TCCAATTGATCCATCCTGGCATATGCTTGGGTTGGGATACCAGAATAAGACAAACATTGAGAGTGTAAAGAAGGCTGCAGTTATCCACTACAATGGTCAG GCAAAACCTTGGCTGGAAATTGGCTTTGAGCATCTTCGACCATTTTGGACCAAATATGTGAATTACTCCAATGATTTTATAAGGAACTGCCACATCCTGG ATTCAGTTTGA
AA sequence Show only first row Show all	>Potri.017G090800.2 pacid=42813523 polypeptide=Potri.017G090800.2.p locus=Potri.017G090800 ID=Potri.017G090800.2.v4.1 annot-version=v4.1 MQLHISRSMRSITISSSSNNGFIDLMKIKVAARHISYRTLFHTILILAFLLPFVFILTALVTLEGVNKCSSFDCLGRRLGPRLLGRVDDSGRLVKDFYKI LNQVKNEEIPDGVKLPASFSHLVSEMKNNQYDARTFAFMLRAMMEKLEREIRESKFSELMNKHFAASSIPKSIHCLSLRLTDEYSSNAHARKQLPSPEFL PLLSDNSYHHFVLSTDNILAASVVVTSTIQSSLKPDNIVFHIITDKKTYAGMHSWFALNPVSPAIVEVKGVHQFDWLTRENVPVLEAVENHNGIRNYYHG NHIAGANLSDTTPRRFASKLQARSPKYISILNHLRIYIPELFPSLDKVVFLDDDVVIQRDLSPLWEIDLKGKVNGAVETCKGEDEWVMSKHFKNYFNFSH PLIAKNLDPDECAWAYGMNIFDLRAWRKTNIRETYHSWLKENLKSNLTMWKLGTLPPALIAFKGHVHPIDPSWHMLGLGYQNKTNIESVKKAAVIHYNGQ AKPWLEIGFEHLRPFWTKYVNYSNDFIRNCHILDSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15470		GAUT14	galacturonosyltransferase 14 (...		Potri.017G090800 [exp]	0	1
AT1G58110	bZIP		Basic-leucine zipper (bZIP) tr...		Potri.003G014800 [exp]	2.82	0.6501
AT1G05270			TraB family protein (.1)		Potri.017G038500 [exp]	4.89	0.6753
AT4G02350		SEC15B	exocyst complex component sec1...		Potri.014G127400 [exp]	7.93	0.6408
AT1G69640		SBH1	sphingoid base hydroxylase 1 (...		Potri.005G200000 [exp]	10.44	0.7283
AT3G18040		ATMPK9	MAP kinase 9 (.1.2)		Potri.015G040300 [exp]	11.22	0.6201	MPK8.2
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Potri.019G047200 [exp]	12.48	0.6510
AT5G67490			unknown protein		Potri.015G017700 [exp]	13.26	0.6914
AT3G07330		ATCSLC6, ATCSLC...	CELLULOSE-SYNTHASE LIKE C6, Ce...		Potri.002G248400 [exp]	14.49	0.6505	ATCSLC06.4
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.005G253400 [exp]	19.74	0.6405
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Potri.019G068700 [exp]	21.79	0.5927

Compare expression of checked genes

Potri.017G090800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.