Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G29310 140 / 5e-36 calmodulin-binding protein-related (.1) AT5G62390 52 / 8e-07 ATBAG7 BCL-2-associated athanogene 7 (.1) AT2G46240 47 / 3e-05 ATBAG6, BAG6 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1) AT1G12060 45 / 5e-05 ATBAG5 BCL-2-associated athanogene 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G124301 [exp] 108 / 3e-28 AT3G29310 45 / 3e-06 calmodulin-binding protein-related (.1) Potri.002G166300 [exp] 58 / 1e-08 AT2G46240 140 / 2e-33 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1) Potri.012G126000 [exp] 56 / 4e-08 AT5G62390 108 / 7e-26 BCL-2-associated athanogene 7 (.1) Potri.015G126800 [exp] 52 / 5e-07 AT5G62390 311 / 1e-102 BCL-2-associated athanogene 7 (.1) Potri.003G167500 [exp] 44 / 0.0002 AT1G12060 88 / 1e-19 BCL-2-associated athanogene 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026469 [exp] 215 / 2e-64 AT3G29310 140 / 3e-36 calmodulin-binding protein-related (.1) Lus10038064 [exp] 213 / 9e-64 AT3G29310 139 / 7e-36 calmodulin-binding protein-related (.1) Lus10010133 [exp] 60 / 3e-09 AT2G46240 67 / 5e-12 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1) Lus10012648 [exp] 60 / 3e-09 AT2G46240 157 / 1e-38 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1) Lus10031724 [exp] 58 / 1e-08 AT5G62390 334 / 1e-111 BCL-2-associated athanogene 7 (.1) Lus10031147 [exp] 56 / 3e-08 AT5G62390 331 / 3e-110 BCL-2-associated athanogene 7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G091100.1 pacid=42813252 polypeptide=Potri.017G091100.1.p locus=Potri.017G091100 ID=Potri.017G091100.1.v4.1 annot-version=v4.1 ATGGCCTCTCATCACCACTGCCAAAACCATGTCTCCGTCCCCACCACCTTTACCACCACCACGACCCCTTGCTGCTGTTACAGCCACTGTTCTCCCCAAC CTCACCACCACCCAATATCACCACCACAATTATCTAATGATCCACTTCTCCAGTCCCTTGTTTCTCTCCTCCAGCAACAGCAGCAGCAACAGCTGCAGCT GCAACACCACCAATCCCATATCTTCTCGCCTTGCCTTGACAGACCGAACAGCCACACAAAAAATCATCACCAGAAACCAAAGCTACATTTTCAACAAGAA GATGACCCCCAACAAACCCATTTTGTTCTCGCTTCTCTTCTTCAACGAATCAACACTCTTGAGTCCTCACTTCACCAATTTTCTGCTTCATGTACGAATA ACCATAACTATCCTTCACATTCTCTCAGAGACACAGCTGCACGTGTTATTCAAACCCATTTCCGTGCCTTTCTTGTTCACAGATCAAGAACCCTAAGGCA GCTCAAGGAGCTTGCTTTTATCAAATCCAGTTTCAACTCTCTCAAATCTTCTATTTCTACTGAATCCCATTTTGATTTCAAGGTCGCTTCTCATAAAGCC ATGGGCTTGCTCCTCAAACTTGACTCCATTCAGGGTGGTGATACTATGATCAGAGATGGAAAAAGGTCAGTTACTAGAGATTTGGTAAGGTTTTTGGAGT TTGTTGATGGATTTGCAATAAAAAGGCATGAACTTTCGTATAAATCTGCTAGGAATGTGAGGGCTTTAGGGAATACTAACAAAGCTAGGGCTTTGAATGC CAAGAATGGTTATGGTGGTTGTCGAGATTTGACTGAAAGTCAAAGGGAAATAGTGGATAAATTGAGAAAAAGAGTTGAAAAGATTAGTGGGTTTTCGAGG GCTTGTGAAAATGACCAAGAAGATGTGGAGCTTGAAGGATTTCAGCAATTCGTTGATGATGGAGATGGAGAGCTAAACCGAAAAGTTTCTGTTGATGGAA AGCGAGGTGTTTCGTTGAAAAAACGAGTTGGTCACCCTAGAGTGAAGAAAACTGTTAGTTTTGCTGAGAACGGGAATTCTTATAGGGTAATTAGTGACAC AGATGAGTCAGTTCTAAACGGAGATGATAGTTTCAATGATGGGAGTGATTACAGTGATGATCATGGGGAGGCTGTGGAGATCCATTTTTCTGAAACTGGG GAAAGAAAAGGATTTTCTAAGGGTGCTGAGAATGACCAGGAAGCTCATTTGGAGGATGGTGGGTCATCACAGAGCAGTGATAGTGGGTATCGCTTGGAGA AAGATGGGAGTTTAGTTTTCTCTGCTCCAGTGCCTGTGAAGATGGAATCAAGAGCTGATTTGATGAAGAGAAAGGCTATGAAAATTGTCACATAG
AA sequence Show only first row Show all	>Potri.017G091100.1 pacid=42813252 polypeptide=Potri.017G091100.1.p locus=Potri.017G091100 ID=Potri.017G091100.1.v4.1 annot-version=v4.1 MASHHHCQNHVSVPTTFTTTTTPCCCYSHCSPQPHHHPISPPQLSNDPLLQSLVSLLQQQQQQQLQLQHHQSHIFSPCLDRPNSHTKNHHQKPKLHFQQE DDPQQTHFVLASLLQRINTLESSLHQFSASCTNNHNYPSHSLRDTAARVIQTHFRAFLVHRSRTLRQLKELAFIKSSFNSLKSSISTESHFDFKVASHKA MGLLLKLDSIQGGDTMIRDGKRSVTRDLVRFLEFVDGFAIKRHELSYKSARNVRALGNTNKARALNAKNGYGGCRDLTESQREIVDKLRKRVEKISGFSR ACENDQEDVELEGFQQFVDDGDGELNRKVSVDGKRGVSLKKRVGHPRVKKTVSFAENGNSYRVISDTDESVLNGDDSFNDGSDYSDDHGEAVEIHFSETG ERKGFSKGAENDQEAHLEDGGSSQSSDSGYRLEKDGSLVFSAPVPVKMESRADLMKRKAMKIVT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G29310			calmodulin-binding protein-rel...		Potri.017G091100 [exp]	0	1
AT5G45540			Protein of unknown function (D...		Potri.015G114900 [exp]	1.73	0.8488
					Potri.005G135700 [exp]	20.00	0.7623
AT4G24060	DOF	AtDof4,6	Dof-type zinc finger DNA-bindi...		Potri.001G086400 [exp]	20.34	0.7614	Pt-DOF4.2
AT2G26060		EMB1345	embryo defective 1345, Transdu...		Potri.014G136700 [exp]	21.63	0.7867
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Potri.010G110700 [exp]	23.91	0.7728	GAI.1
AT4G32290			Core-2/I-branching beta-1,6-N-...		Potri.006G254800 [exp]	31.36	0.7366
AT1G68130	C2H2ZnF	IDD14beta, IDD1...	indeterminate(ID)-domain 14 (....		Potri.008G140400 [exp]	34.98	0.7491
AT1G51700	DOF	ADOF1, AtDof1. ...	DOF zinc finger protein 1 (.1)		Potri.004G038800 [exp]	37.56	0.7075
AT2G44200			CBF1-interacting co-repressor ...		Potri.016G000501 [exp]	40.80	0.7743
					Potri.019G129780 [exp]	45.36	0.7855

Compare expression of checked genes

Potri.017G091100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.