Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37170 925 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 539 / 0 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G02750 537 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 527 / 7e-179 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 513 / 2e-173 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G03880 493 / 7e-167 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G68930 496 / 1e-166 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G20230 492 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G02010 486 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G13770 479 / 2e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G040100 [exp] 553 / 0 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G136200 [exp] 550 / 0 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.007G085500 [exp] 530 / 3e-179 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.012G048800 [exp] 526 / 5e-178 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G208000 [exp] 518 / 8e-176 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G071800 [exp] 517 / 6e-175 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G041200 [exp] 516 / 1e-172 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G085800 [exp] 509 / 2e-172 AT4G02750 491 / 3e-164 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 515 / 3e-171 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036921 [exp] 937 / 0 AT4G37170 806 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030908 [exp] 535 / 3e-175 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10016425 [exp] 520 / 5e-175 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030581 [exp] 532 / 3e-174 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10033026 [exp] 515 / 8e-174 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 504 / 4e-170 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 511 / 1e-169 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 504 / 5e-167 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035164 [exp] 499 / 8e-167 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022629 [exp] 493 / 2e-166 AT2G41080 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.017G091600.1 pacid=42813636 polypeptide=Potri.017G091600.1.p locus=Potri.017G091600 ID=Potri.017G091600.1.v4.1 annot-version=v4.1 ATGACAAGATTTCTTGCAAACCTCAAGCCCTCTCATTCTTCCTCTGTCTTTAACCACTCCCACAAAATCATTGCATTTCCTTATTCTTCTCAAACCACTC AGCCTTTTCAACCAAAAACCTTCTTCAAATCAAACACCAAAGATACCACCCTCGTACCTCACTTGTGCAATCACAAGAGGTTCGATGAAGCCATTCATAT TTTATGCCAACAAAACCGCTTAAAAGAAGCGTTACAAATTCTCCACCAAATCGACAAACCCTCTGCTTCTGTTTACTCGACTCTTATTCAATCTTGCATT AAAAGTCGGCTTCTCCAACAAGGCAAAAAAGTCCATCAACACATCAAGCTATCTGGGTTTGTACCCGGTTTGTTCATTTTAAATCGGCTTCTTGAAATGT ATGCAAAATGTGATAGTTTGATGGATTCCCAGAAGTTGTTTGACGAAATGCCTGAAAGGGATTTGTGTTCATGGAATATTTTGATTTCTGGGTATGCAAA AATGGGTTTACTCCAAGAAGCGAAAAGCCTGTTTGATAAAATGCCTGAGAGAGATAATTTTTCTTGGACCGCGATGATTTCTGGGTACGTCCGTCATGAT AGGCCTAATGAGGCTTTAGAGCTGTTTAGAATGATGAAGAGAAGTGATAATTCCAAGTCGAATAAGTTTACAGTTTCCAGTGCTCTTGCTGCTGCGGCAG CTGTTCCGTGTTTGAGGATTGGGAAAGAGATTCATGGCTATATAATGAGAACAGGGTTGGATTCTGACGAGGTAGTTTGGAGCGCCTTGTCTGATATGTA TGGTAAATGTGGGAGCATAGAGGAAGCAAGGCACATTTTTGACAAGATGGTGGATAGAGATATTGTTACTTGGACGGCAATGATTGATAGGTACTTTCAG GATGGGAGGAGAAAAGAGGGATTCGATTTGTTTGCGGACTTACTGAGGTCAGGTATCAGGCCTAACGAGTTCACTTTTTCTGGGGTTTTAAATGCTTGTG CTAATCAGACTTCAGAGGAGCTTGGTAAGAAGGTTCATGGTTACATGACTAGAGTTGGGTTTGACCCATTCTCCTTTGCGGCAAGTGCTCTTGTTCACAT GTATTCTAAGTGCGGAAATATGGTGAGCGCAGAAAGGGTGTTTAAAGAAACGCCCCAGCCAGATTTGTTTTCATGGACTTCATTGATTGCTGGGTATGCT CAAAATGGCCAACCTGATGAGGCTATTCGGTATTTTGAGCTGCTAGTAAAGTCAGGGACACAACCTGATCACATAACTTTTGTTGGCGTTCTATCTGCTT GTGCTCATGCTGGATTAGTTGATAAAGGGCTTGATTACTTTCACTCAATAAAAGAGCAATATGGGTTAACTCATACTGCTGATCATTATGCTTGTATAAT TGATTTACTGGCCCGATCTGGCCAATTTGACGAAGCTGAGAATATCATAAGTAAAATGTCAATGAAGCCTGATAAGTTTCTGTGGGCTTCCTTGCTAGGT GGTTGTAGAATTCATGGAAATCTTAAATTGGCACAAAGGGCAGCAGAAGCATTATTTGAGATTGAGCCTGAAAATCCTGCTACTTATGTTACGCTGGCCA ACATATATGCCACGGCTGGTATGTGGAGTGAAGTAGCGAAGATCAGAAAGACCATGGATGACCGAGGAGTGGTGAAGAAACCAGGTTTAAGTTGGATTGC GATTAAGAGGGACGTGCATGTATTCTTAGTAGGAGATGATTCACACCCGAAATCCAAAGAAATAAATGAGTTTTTGGGGAAGCTGTCCAAAAGGATGAAG GAAGAAGGGTTTGTTCCTGACACCAATTTTGTGTTGCATGATGTGGAGGACGAACAGAAGGAACAAAACCTCTCTTACCATAGTGAGAAGCTTGCTGTAG CTTTTGGAATTATTTCAACTCCAGAAGGAACACCGATCAAGGTTTTTAAGAATTTAAGAACGTGTGTAGACTGCCACACTGCAATTAAATTTATCTCAAA GATCACAAATAGAAAAATAATTGTGAGGGATTCGAATCGGTTCCATTTTTTTGAGGATGGACACTGCTCATGTAGAGACTATTGGTGA
AA sequence Show only first row Show all	>Potri.017G091600.1 pacid=42813636 polypeptide=Potri.017G091600.1.p locus=Potri.017G091600 ID=Potri.017G091600.1.v4.1 annot-version=v4.1 MTRFLANLKPSHSSSVFNHSHKIIAFPYSSQTTQPFQPKTFFKSNTKDTTLVPHLCNHKRFDEAIHILCQQNRLKEALQILHQIDKPSASVYSTLIQSCI KSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHD RPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQ DGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYA QNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLG GCRIHGNLKLAQRAAEALFEIEPENPATYVTLANIYATAGMWSEVAKIRKTMDDRGVVKKPGLSWIAIKRDVHVFLVGDDSHPKSKEINEFLGKLSKRMK EEGFVPDTNFVLHDVEDEQKEQNLSYHSEKLAVAFGIISTPEGTPIKVFKNLRTCVDCHTAIKFISKITNRKIIVRDSNRFHFFEDGHCSCRDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37170			Pentatricopeptide repeat (PPR)...		Potri.017G091600 [exp]	0	1
AT1G48570			zinc finger (Ran-binding) fami...		Potri.015G038200 [exp]	2.44	0.9274
AT1G73090			unknown protein		Potri.010G250100 [exp]	4.89	0.9059
AT1G07615			GTP-binding protein Obg/CgtA (...		Potri.001G239600 [exp]	8.77	0.8337
AT1G29900		VEN3, CARB	VENOSA 3, carbamoyl phosphate ...		Potri.010G023100 [exp]	11.31	0.8848	Pt-CARB.1
AT1G30010			Intron maturase, type II famil...		Potri.004G132450 [exp]	13.07	0.9011
AT3G22670			Pentatricopeptide repeat (PPR)...		Potri.010G083900 [exp]	13.63	0.8855
AT2G37310			Pentatricopeptide repeat (PPR)...		Potri.006G216100 [exp]	17.43	0.8938
AT1G78930			Mitochondrial transcription te...		Potri.007G001800 [exp]	18.16	0.8871
AT1G07740			Tetratricopeptide repeat (TPR)...		Potri.003G204100 [exp]	18.24	0.8829
AT3G25970			Pentatricopeptide repeat (PPR)...		Potri.007G146800 [exp]	22.27	0.8755

Compare expression of checked genes

Potri.017G091600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.