Plant FIBer expression Database

Potri.017G091700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G61190 61 / 6e-10 C2H2ZnF putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0361 C2H2-zf PF12874 zf-met Zinc-finger of C2H2 type
Representative CDS sequence
>Potri.017G091700.1 pacid=42813293 polypeptide=Potri.017G091700.1.p locus=Potri.017G091700 ID=Potri.017G091700.1.v4.1 annot-version=v4.1
ATGGAGTACGCAGCAGCAGCATATCCTCAAATGCATCAAAATCAAAATGCAAACCCTAACCCACCGCAGCAACAGCCACAGCGACAGCCACAACCAATCT
CTACTTCTTTATACTCTTCTTATTATTATCCTCCTCCTGCTGCTGTTGCTGCTGATCCCCAAAACCAGCACATTACTACTCAATTCTACACCACTGACCC
CACTACCAGTCTTACACCTCCTGGGGTTGAATCCTACACTAACTACCCACATCTTGCCTACTGTTTCGATCCCAATTCCAATACTTGGGTTGCTAAGGAA
GCTGTTCGGCAATATGGGTCTGCTCCTGCTGCCTTTCCTGCCCCTGTTAGCAACACTATACCTCCAAATGGCACAGAGCAGTTGGCCGTTTCACATCTGG
ACTCAACTTTGTGGGCCAATCTTACATTTCTTGCCCAAGGAAATAGCAATCAGAAGAAGCAACAGAAAAAAACACAGCAAAAGAAAATGAAGGTTGTTCA
ATCTGCATATTGTGAAGTTTGTAAGGTGGACTGCAACAGCAAGGATGTACTTGACCAGCATAAACTAGGAAAGAAGCATAAGAAAAACTTGGAGAAATTA
CAAGCAGCTGCTGCTGGCTGCAGTGTCTCAGCAGGATCAAGTAATCCAGTTATTGGGCCACAAGAAAACCCCAGTAAGAGTGAAAATGGAAATGGGCAAA
AGAGTAAGAAGAAGGCCGCTGAACCACTGGAAGATTTGGATACGAAGAGAAGAAGAATTCTTGAGGGTGGAGCAGCAGCAGATGCAGTCAGGGTATGTTC
GTTTTGTAATGTGGTGTGCAACAGTGATACAGTGTTCAATTCTCATCTTGCTGGACAAAAGCATGCTGCTATGCTGAAAAAGCTTGCTGGAATAAGAATG
GCCACTGCCATATAA
AA sequence
>Potri.017G091700.1 pacid=42813293 polypeptide=Potri.017G091700.1.p locus=Potri.017G091700 ID=Potri.017G091700.1.v4.1 annot-version=v4.1
MEYAAAAYPQMHQNQNANPNPPQQQPQRQPQPISTSLYSSYYYPPPAAVAADPQNQHITTQFYTTDPTTSLTPPGVESYTNYPHLAYCFDPNSNTWVAKE
AVRQYGSAPAAFPAPVSNTIPPNGTEQLAVSHLDSTLWANLTFLAQGNSNQKKQQKKTQQKKMKVVQSAYCEVCKVDCNSKDVLDQHKLGKKHKKNLEKL
QAAAAGCSVSAGSSNPVIGPQENPSKSENGNGQKSKKKAAEPLEDLDTKRRRILEGGAAADAVRVCSFCNVVCNSDTVFNSHLAGQKHAAMLKKLAGIRM
ATAI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G61190 C2H2ZnF putative endonuclease or glyco... Potri.017G091700
[exp]
0 1
AT1G34160 Tetratricopeptide repeat (TPR)... Potri.005G199800
[exp]
4.69 0.8691
AT1G07740 Tetratricopeptide repeat (TPR)... Potri.001G020501
[exp]
4.89 0.8607
AT3G07440 unknown protein Potri.002G250500
[exp]
6.00 0.8497
AT5G62950 RNA polymerase II, Rpb4, core ... Potri.005G067600
[exp]
9.21 0.8410
AT3G09250 Nuclear transport factor 2 (NT... Potri.006G093700
[exp]
12.40 0.8376
AT4G39470 Tetratricopeptide repeat (TPR)... Potri.005G085700
[exp]
13.49 0.8268
AT5G22080 Chaperone DnaJ-domain superfam... Potri.001G215800
[exp]
16.49 0.8125
AT3G22690 unknown protein Potri.010G083700
[exp]
23.87 0.8332
AT1G73380 unknown protein Potri.004G067200
[exp]
25.76 0.8365
AT3G12650 unknown protein Potri.009G063700
[exp]
35.31 0.8019

Potri.017G091700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.