Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26580 218 / 2e-65 unknown protein AT1G13880 191 / 1e-55 ELM2 domain-containing protein (.1) AT2G03470 182 / 2e-52 MYB ELM2 domain-containing protein (.1.2) AT4G11400 111 / 4e-26 ARID ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) AT5G04110 86 / 7e-18 GYRB3 DNA GYRASE B3 (.1) AT2G46040 80 / 9e-16 ARID ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G118400 [exp] 746 / 0 AT1G26580 219 / 2e-65 unknown protein Potri.010G159700 [exp] 212 / 1e-62 AT1G26580 253 / 1e-77 unknown protein Potri.008G094400 [exp] 210 / 7e-62 AT1G26580 280 / 3e-88 unknown protein Potri.014G086700 [exp] 134 / 2e-33 AT2G46040 247 / 2e-73 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.002G161100 [exp] 129 / 7e-32 AT2G46040 221 / 4e-64 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.001G101800 [exp] 124 / 1e-31 AT4G11400 272 / 1e-86 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Potri.003G129800 [exp] 127 / 2e-31 AT4G11400 319 / 7e-101 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000680 [exp] 215 / 1e-64 AT1G13880 200 / 3e-59 ELM2 domain-containing protein (.1) Lus10021636 [exp] 197 / 5e-58 AT2G03470 188 / 5e-55 ELM2 domain-containing protein (.1.2) Lus10026655 [exp] 186 / 3e-53 AT1G26580 237 / 3e-72 unknown protein Lus10004658 [exp] 184 / 2e-52 AT1G26580 243 / 1e-74 unknown protein Lus10036888 [exp] 177 / 1e-49 AT1G26580 253 / 1e-77 unknown protein Lus10037097 [exp] 177 / 3e-49 AT1G26580 249 / 4e-76 unknown protein Lus10032272 [exp] 128 / 2e-33 AT4G11400 187 / 6e-55 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10024636 [exp] 127 / 1e-31 AT4G11400 187 / 5e-53 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10014762 [exp] 103 / 2e-23 AT2G46040 242 / 4e-72 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1) Lus10036373 [exp] 102 / 5e-23 AT4G11400 249 / 8e-75 ARID/BRIGHT DNA-binding domain;ELM2 domain protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G091900.3 pacid=42814477 polypeptide=Potri.017G091900.3.p locus=Potri.017G091900 ID=Potri.017G091900.3.v4.1 annot-version=v4.1 ATGATTCACAAACGTGCTTTTTCTGATGATAATTTATATGAGTTTGCTTGTAAGCACCCCAGACAAATGGAGCACATTGATCAGCTTGCTCCTATTTTCC CACTTGACAGTGGGCACCAGAAACATCTTGTTTCAGGTGATGACAGTTTTAGAAAGTGTCAAGAAGTAGGGAGGTCTGCAAGTGACTTGTTCAGTGAATG TTCAAATGGGACTAGCAAGGGATTTGAAACTGGTGATAATGGTTGTTTCCCCCACTTTTTGTGGATTGGAAATGGGATTCTTGAAGCCGATAATTTATCA TTCTTCCCAGAATATTTTGATCATGGGCACCAGCTCAGGGCTTTACTTGAGCCTGAAGAGGCCTGCTCATCTCTTGATTACCCTTTTCAGAAGCAGGTTT CTGTTGGACCAGAGCATCAAGCTTATGTCCCAGAGTGGGACTCCCAGGGTTCAAGCACCTCCCTGAACCAGCTAGATGACTCTAACCTTCAAGTTGCATG TGCACATTCATCTAGCCCAGGTGTCATAATTGATGGTGGTTACGAGGAGAACCTGATGGGTACTTGTATCCTTCCCATGCCTGACCTGGAAGCATCTGCA AATTACTGCTATGAAGCTACCAATCATGACTGTGCATGCCCTGATGCAGGTTCTATCAGATGCATAAAACAACATGTCTCAGAAGCTAGGCTGAAACTTA GAGAGAACCTTGGGGAGGAGATATTCGAAGGGTTGGGGTTCTGTGATATGGGAGAGGTGGTTGCAAATAAATGGACTGACGAGGAAGAGCAAGCCTTCCA TGAGGTGGTCTTATCCAATCCTGTTTCTTTGGGAAAAAACTTTTGGGACCATCTGTCCGCAACATTCCCTTCCCGAACAAAGAAGGAGCTTGTTAGTTAT TATTTCAATGTATTCATGCTCCAGAAACGTGCTGAGCAGAACAGGTTTGACCCTCTAAATATTGACAGCGATGATGATGAGTGGCAAAAAATTGAGGGTG AAACAGTAGAGGAAGATGAGGATTCTGTGGTGGAATCTCTGACTGTTCAGGATTCCTCTGCTTACTGTCAAGAGGATCATGCTGAGAAGTTCAATGAATA TGTTGAGGATGAGGATGAAGCTGTTGCTTCTAAAGATGGTGTTGATAATGTGGTTCGTGGAATTGCAACTGATGCGGAATATGAGGGAGATGTAGATGAT TTTTCAGGAGCACATGTTGGGATTTACCATGGTTGTGTTGGTGACCTTGGACCTAAACATTTCAATGGAATTGCTGGGACCAACACAGATGATTGTGATG TTCAAGATGATTCATGCACATCGTATGAGCATCATCGAGACAGCATTGATTGCTATGGTCCACTTGATATGGGAACTGATGGGAGACACTCCAGTCAAGA GTAA
AA sequence Show only first row Show all	>Potri.017G091900.3 pacid=42814477 polypeptide=Potri.017G091900.3.p locus=Potri.017G091900 ID=Potri.017G091900.3.v4.1 annot-version=v4.1 MIHKRAFSDDNLYEFACKHPRQMEHIDQLAPIFPLDSGHQKHLVSGDDSFRKCQEVGRSASDLFSECSNGTSKGFETGDNGCFPHFLWIGNGILEADNLS FFPEYFDHGHQLRALLEPEEACSSLDYPFQKQVSVGPEHQAYVPEWDSQGSSTSLNQLDDSNLQVACAHSSSPGVIIDGGYEENLMGTCILPMPDLEASA NYCYEATNHDCACPDAGSIRCIKQHVSEARLKLRENLGEEIFEGLGFCDMGEVVANKWTDEEEQAFHEVVLSNPVSLGKNFWDHLSATFPSRTKKELVSY YFNVFMLQKRAEQNRFDPLNIDSDDDEWQKIEGETVEEDEDSVVESLTVQDSSAYCQEDHAEKFNEYVEDEDEAVASKDGVDNVVRGIATDAEYEGDVDD FSGAHVGIYHGCVGDLGPKHFNGIAGTNTDDCDVQDDSCTSYEHHRDSIDCYGPLDMGTDGRHSSQE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26580			unknown protein		Potri.017G091900 [exp]	0	1
AT1G26580			unknown protein		Potri.004G118400 [exp]	4.47	0.7482
AT5G39890			Protein of unknown function (D...		Potri.017G079400 [exp]	12.36	0.6532
AT3G14400		UBP25	ubiquitin-specific protease 25...		Potri.001G394600 [exp]	13.63	0.6675
AT5G01380	Trihelix		Homeodomain-like superfamily p...		Potri.006G101400 [exp]	19.89	0.6547
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.009G015000 [exp]	21.63	0.7105
AT5G53460		GLT1	NADH-dependent glutamate synth...		Potri.012G011700 [exp]	26.72	0.6075	Pt-GLT1.3
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Potri.007G025200 [exp]	30.21	0.6446
AT2G42760			unknown protein		Potri.004G059900 [exp]	48.34	0.6349
AT2G34930			disease resistance family prot...		Potri.015G025800 [exp]	48.49	0.5741
AT2G33710	AP2_ERF		Integrase-type DNA-binding sup...		Potri.005G087200 [exp]	55.74	0.6427

Compare expression of checked genes

Potri.017G091900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.