Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13570 65 / 2e-11 F-box/RNI-like superfamily protein (.1) AT3G03360 45 / 5e-05 F-box/RNI-like superfamily protein (.1) AT3G42770 44 / 0.0002 F-box/RNI-like/FBD-like domains-containing protein (.1) AT5G22670 44 / 0.0002 F-box/RNI-like/FBD-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G106600 [exp] 115 / 2e-28 AT5G56420 80 / 4e-16 F-box/RNI-like/FBD-like domains-containing protein (.1.2) Potri.014G039700 [exp] 81 / 2e-16 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.010G134200 [exp] 75 / 2e-14 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.002G132400 [exp] 68 / 4e-12 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.016G106650 [exp] 62 / 5e-11 AT5G39040 60 / 9e-11 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.008G110400 [exp] 61 / 6e-10 AT1G13570 419 / 2e-144 F-box/RNI-like superfamily protein (.1) Potri.011G042900 [exp] 60 / 2e-09 AT1G61330 226 / 2e-68 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.017G107600 [exp] 56 / 2e-08 AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 45 / 0.0001 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034414 [exp] 74 / 6e-14 AT1G13570 475 / 5e-167 F-box/RNI-like superfamily protein (.1) Lus10019144 [exp] 73 / 7e-14 AT1G13570 482 / 6e-170 F-box/RNI-like superfamily protein (.1) Lus10034415 [exp] 62 / 1e-10 AT1G13570 358 / 1e-123 F-box/RNI-like superfamily protein (.1) Lus10028366 [exp] 49 / 3e-06 AT1G13570 98 / 4e-23 F-box/RNI-like superfamily protein (.1) Lus10035151 [exp] 43 / 0.0005 AT5G51170 306 / 7e-101 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08387 [poplar] [flax] FBD FBD
Representative CDS sequence Show only first row Show all	>Potri.017G092301.1 pacid=42813247 polypeptide=Potri.017G092301.1.p locus=Potri.017G092301 ID=Potri.017G092301.1.v4.1 annot-version=v4.1 ATGAAAGATTTGGTTAAGACCAGTGCTCTATCCAACAGATGGAAGCACCTCTGGGCGCTGAGGACCAACCTCAATTTCGATGTTGACGGCATCTTTGGAA CCAATCATGAAAGGCCCGATTGCAGTTCAAAACATAGCAAACATTATAAGGAATTTAAGCTTGAATTCGCAAGGTGTGTCGATGGATTCTTGCAGAATTT CCAAGGCACAAAAATAATTTCTTTCAAGCTGCATTTCTTGAAACATCTTGGAGACACTTCTAACATTAATCAATGGATTAGTTCTGTGATTGGATTGGGA ATTGAAGAGCTTGAACTTTTCTTATCAGGCATGACATTATTTTCCTATTATCATCATGGTCTGTTAGGTGATGAATATTATAGATTTCCCGATTGGCTTC TTCCCCATCCTAGTGATTCAAGATTAAAGCACTTGCATCTACGAACTTGTGTTTTAAAACCTCCTGCTGATTTTATCGGATTCAACAAACTAATAACCTT ACAACTGCACGACGTATTTTTGGGAGAAGAATTTCTTGCATCCCTCTTCTCCAACTGTTTGCTTCTTCAAGTGTTGCTTGATTGCTCCAACCCATCACCA GTTAAGGTAATAGCCGTAAATCTCACGGATTTTGAGTATAGTGGAGACATCATGAAGATCACTGTATTTGTTGCTCCTTGTCTGGTAAAGATCTACTTCA ATTTCAATTCAATTCATGTGATAGACATGCCGAATGCATTATCCCACTGTGCAACATTTCCAACTTTACAGACTCTAATCCTGCATCTGGACCCTTGGAA GGAAAAAAGATTACCACAGAGCATGGACTCGCTCAGAAATCTGAAGCAACTAGAGCTATTTTATATCAAAGCAAGTAAGGAAGAGGATCTGTTGTGGGTA TTGACATATCTAAATGCTTGTCCACTTCTGGAGAAACTTGATATCACGCTGAGCGGTGAAGAATTCCACAAAAATCAAAGAGAGATGCGAAATATCTGTG GATGCACATATAGCAGACTCAAGAAGGTTCGGATGAATGGATTTGATGGTAACTGGTTCGAAATGGAGTTGATAACGCATATACTGAAAAGTGCAACATC CCTTGATCAAGTTGTTATCAGTCCCTTGGCTAGTTTTTATCTCGGAGGTGGTGAATGGAGTCATATTACTCCAGATGAGTCCTGGCATGAATCACGACGG GATGTTGTTAGAAAATCACTTCAAGAAAATGCTCCTGCTGGTGTTCATCTTGTAGTCTTATGA
AA sequence Show only first row Show all	>Potri.017G092301.1 pacid=42813247 polypeptide=Potri.017G092301.1.p locus=Potri.017G092301 ID=Potri.017G092301.1.v4.1 annot-version=v4.1 MKDLVKTSALSNRWKHLWALRTNLNFDVDGIFGTNHERPDCSSKHSKHYKEFKLEFARCVDGFLQNFQGTKIISFKLHFLKHLGDTSNINQWISSVIGLG IEELELFLSGMTLFSYYHHGLLGDEYYRFPDWLLPHPSDSRLKHLHLRTCVLKPPADFIGFNKLITLQLHDVFLGEEFLASLFSNCLLLQVLLDCSNPSP VKVIAVNLTDFEYSGDIMKITVFVAPCLVKIYFNFNSIHVIDMPNALSHCATFPTLQTLILHLDPWKEKRLPQSMDSLRNLKQLELFYIKASKEEDLLWV LTYLNACPLLEKLDITLSGEEFHKNQREMRNICGCTYSRLKKVRMNGFDGNWFEMELITHILKSATSLDQVVISPLASFYLGGGEWSHITPDESWHESRR DVVRKSLQENAPAGVHLVVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13570			F-box/RNI-like superfamily pro...		Potri.017G092301 [exp]	0	1
AT2G33100		ATCSLD1	CELLULOSE-SYNTHASE LIKE D1, ce...		Potri.003G177800 [exp]	13.11	0.6027	ATCSLD1.1
AT3G25150			Nuclear transport factor 2 (NT...		Potri.002G246600 [exp]	26.66	0.6884
AT4G35940			unknown protein		Potri.009G134800 [exp]	50.40	0.6109
AT1G28200		FIP1	FH interacting protein 1 (.1)		Potri.014G109700 [exp]	78.07	0.6287
AT4G02390		ATPARP1, APP	POLY\(ADP-RIBOSE\) POLYMERASE ...		Potri.014G128200 [exp]	109.65	0.5872	Pt-APP.2
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.010G187300 [exp]	114.43	0.5150
AT1G73110			P-loop containing nucleoside t...		Potri.003G187601 [exp]	133.46	0.5887
AT3G01600	NAC	ANAC044	NAC domain containing protein ...		Potri.001G343800 [exp]	138.47	0.5849
AT5G26594		ARR24	response regulator 24 (.1)		Potri.019G024900 [exp]	160.92	0.5264
AT3G19280		FUCTA, FUCT1, A...	fucosyltransferase 11 (.1)		Potri.019G091200 [exp]	161.24	0.5264	FUCT3.1

Compare expression of checked genes

Potri.017G092301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.